Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027679.1

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Reverse (-)

964 .. 2563

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027679.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgatctttatctttgtatgcgttgttccagctgtgaagtcatcagcgtttgagctagaggaggatgagtactcatggcttaacgatgaagatgatcaggctaacatggttcagagccaccaaagttcaagaagcaagtgtgaactgtctgccggaaagtgggtttatgatcaatcctaccctctctatgactcgagctgtccatatcttagcactgctgtcgcttgtcagaaaaatggaaggcctgattccgactacgaaaagtggcgctggaagccaaacgactgttccattcctaggtttgatgcattgaaatttcttggtaaaatgagaaaaaaaagaataatgctagtgggtgattctataatgaggaatcagtgggagtctcttgtgtgcttagtacaaggagttgttccaacaggtcgaaagagagtcacctacaatggtccttctatggcattccatgcaatggactttgggacatcaattgagttttcttgggctccactcctagtagaattgaacaagggagctgcaaacaagaggattttgcatttggatttgatagagaagaatgcaaagtattggagaggagttgatgttcttgtttttgattcagctcactggtggactcattctgacaaaacatcgtcgtgggattactacatggaaggacaatcactgtttacaaatatgaatccaatggttgcataccagaaaggactcactacatgggctaaatgggttgatttaaacctagaccctcgtaaaacccgagtaattttccgaagcatgtcgcctaggcataacagagaaaatggttggagatgctacaatcagaagaagcctctcgcttatttcagtcaccaacatgttcctgaacctctgctagtactgcaaggggtattgagaaagatgagatttccagtttatcttcaggacataaccacaatctcagcgtttagaagagacgggcacccttctgtgtacagacgggccatgggacaggaagagaagcagcacctaagagagtattcgtcggactgcagccattggtgtcttcctggtgtgcctgatatttggaatgagatgttgagtaccttgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

369

Amino Acids

43.08

Weight (kDa)

8.72

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	975
AccB7I	CCANNNNNTGG	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	5 cut(s)	71, 402, 894, 989, 1099
AfiI	CCNNNNNNNGG	3 cut(s)	159, 297, 469
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	3 cut(s)	129, 313, 523
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	5 cut(s)	32, 55, 198, 533, 620
AluI	AGCT	5 cut(s)	32, 55, 198, 533, 620
Alw26I	GTCTC	2 cut(s)	390, 963
Ama87I	CYCGRG	2 cut(s)	193, 774
AoxI	GGCC	2 cut(s)	242, 996
ApeKI	GCWGC	3 cut(s)	533, 1018, 1047
ApoI	RAATTY	1 cut(s)	314
AspA2I	CCTAGG	2 cut(s)	296, 800
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	446, 996
AsuHPI	GGTGA	3 cut(s)	368, 427, 857
AvaI	CYCGRG	2 cut(s)	193, 774
AvaII	GGWCC	1 cut(s)	446
AvrII	CCTAGG	2 cut(s)	296, 800
BaeGI	GKGCMC	1 cut(s)	978
BanI	GGYRCC	1 cut(s)	975
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	1052
BbvI	GCAGC	3 cut(s)	520, 1030, 1059
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	1065
BclI	TGATCA	2 cut(s)	94, 169
BcoDI	GTCTC	2 cut(s)	390, 963
BfaI	CTAG	7 cut(s)	56, 297, 350, 512, 758, 801, 890
BfmI	CTRYAG	1 cut(s)	1045
BfoI	RGCGCY	1 cut(s)	271
BisI	GCNGC	3 cut(s)	534, 1019, 1048
BlnI	CCTAGG	2 cut(s)	296, 800
BlsI	GCNGC	3 cut(s)	535, 1020, 1049
BmcAI	AGTACT	2 cut(s)	71, 894
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	2 cut(s)	193, 774
BmgT120I	GGNCC	2 cut(s)	446, 996
BmiI	GGNNCC	2 cut(s)	504, 977
BmrFI	CCNGG	1 cut(s)	1065
BmsI	GCATC	2 cut(s)	295, 818
BpiI	GAAGAC	1 cut(s)	1052
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	296, 800, 999
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 585, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 297, 469
Bse1I	ACTGG	2 cut(s)	629, 926
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	3 cut(s)	296, 800, 999
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	159, 297, 469
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	2 cut(s)	629, 926
BseRI	GAGGAG	2 cut(s)	74, 606
BseSI	GKGCMC	1 cut(s)	978
BseXI	GCAGC	3 cut(s)	520, 1030, 1059
BshFI	GGCC	2 cut(s)	244, 998
BshNI	GGYRCC	1 cut(s)	975
BsiHKCI	CYCGRG	2 cut(s)	193, 774
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	493, 1017
BslI	CCNNNNNNNGG	3 cut(s)	159, 297, 469
BsmAI	GTCTC	2 cut(s)	390, 963
BsmBI	CGTCTC	1 cut(s)	963
BsmFI	GGGAC	2 cut(s)	493, 1017
BsmI	GAATGC	2 cut(s)	458, 580
BsnI	GGCC	2 cut(s)	244, 998
BsoBI	CYCGRG	2 cut(s)	193, 774
Bsp1286I	GDGCHC	2 cut(s)	505, 978
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	3 cut(s)	3, 94, 169
Bsp19I	CCATGG	1 cut(s)	999
BspANI	GGCC	2 cut(s)	244, 998
BspCNI	CTCAG	1 cut(s)	968
BspLI	GGNNCC	2 cut(s)	504, 977
BspMAI	CTGCAG	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	975
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	2 cut(s)	629, 926
BssECI	CCNNGG	3 cut(s)	296, 800, 999
BssMI	GATC	3 cut(s)	3, 94, 169
BssT1I	CCWWGG	3 cut(s)	296, 800, 999
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	147, 287, 684
Bst6I	CTCTTC	2 cut(s)	961, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	987
BstDEI	CTNAG	4 cut(s)	209, 397, 955, 1025
BstDSI	CCRYGG	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	6, 97, 172
BstMAI	GTCTC	2 cut(s)	390, 963
BstMBI	GATC	3 cut(s)	3, 94, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 464, 895
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	2 cut(s)	796, 875
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	1 cut(s)	1045
BstSLI	GKGCMC	1 cut(s)	978
BstV1I	GCAGC	3 cut(s)	520, 1030, 1059
BstV2I	GAAGAC	1 cut(s)	1052
BsuRI	GGCC	2 cut(s)	244, 998
BtgI	CCRYGG	1 cut(s)	999
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	4 cut(s)	213, 383, 622, 680
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	446, 996
Csp6I	GTAC	5 cut(s)	70, 401, 893, 988, 1098
CviAII	CATG	8 cut(s)	75, 106, 464, 667, 732, 793, 872, 1000
CviQI	GTAC	5 cut(s)	70, 401, 893, 988, 1098
DdeI	CTNAG	4 cut(s)	209, 397, 955, 1025
DpnI	GATC	3 cut(s)	5, 96, 171
DpnII	GATC	3 cut(s)	3, 94, 169
DraI	TTTAAA	1 cut(s)	753
Eam1104I	CTCTTC	2 cut(s)	961, 1005
EarI	CTCTTC	2 cut(s)	961, 1005
Eco130I	CCWWGG	3 cut(s)	296, 800, 999
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	920
Eco88I	CYCGRG	2 cut(s)	193, 774
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	3 cut(s)	296, 800, 999
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	3 cut(s)	296, 800, 999
Esp3I	CGTCTC	1 cut(s)	963
FaeI	CATG	8 cut(s)	78, 109, 467, 670, 735, 796, 875, 1003
FaqI	GGGAC	2 cut(s)	493, 1017
FatI	CATG	8 cut(s)	74, 105, 463, 666, 731, 792, 871, 999
FbaI	TGATCA	2 cut(s)	94, 169
Fnu4HI	GCNGC	3 cut(s)	534, 1019, 1048
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	534, 1019, 1048
FspBI	CTAG	7 cut(s)	56, 297, 350, 512, 758, 801, 890
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	3 cut(s)	534, 1019, 1048
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	244, 998
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	8 cut(s)	78, 109, 467, 670, 735, 796, 875, 1003
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	368, 427, 857
Hpy166II	GTNNAC	4 cut(s)	143, 630, 687, 988
Hpy188I	TCNGA	7 cut(s)	114, 231, 253, 640, 788, 840, 1042
Hpy188III	TCNNGA	3 cut(s)	129, 878, 938
Hpy8I	GTNNAC	4 cut(s)	143, 630, 687, 988
Hpy99I	CGWCG	2 cut(s)	655, 1042
HpyAV	CCTTC	4 cut(s)	234, 459, 665, 990
HpyCH4III	ACNGT	3 cut(s)	147, 287, 684
HpyCH4V	TGCA	8 cut(s)	308, 467, 536, 553, 578, 710, 898, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 464, 895
HpyF3I	CTNAG	4 cut(s)	209, 397, 955, 1025
Hsp92II	CATG	8 cut(s)	78, 109, 467, 670, 735, 796, 875, 1003
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	2 cut(s)	94, 169
Kzo9I	GATC	3 cut(s)	3, 94, 169
LmnI	GCTCC	2 cut(s)	508, 530
Lsp1109I	GCAGC	3 cut(s)	520, 1030, 1059
LweI	GCATC	2 cut(s)	295, 818
MaeI	CTAG	7 cut(s)	56, 297, 350, 512, 758, 801, 890
MaeIII	GTNAC	2 cut(s)	433, 863
MalI	GATC	3 cut(s)	5, 96, 171
MboI	GATC	3 cut(s)	3, 94, 169
MboII	GAAGA	7 cut(s)	101, 583, 853, 926, 978, 1022, 1052
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	505, 978
MluCI	AATT	4 cut(s)	314, 486, 518, 780
MlyI	GAGTC	5 cut(s)	185, 392, 441, 625, 717
MmeI	TCCRAC	4 cut(s)	276, 440, 803, 1020
MnlI	CCTC	9 cut(s)	52, 55, 192, 363, 537, 584, 774, 858, 894
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	81, 752
MslI	CAYNNNNRTG	2 cut(s)	652, 870
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	1065
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	458, 580
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	3 cut(s)	274, 464, 895
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	3 cut(s)	3, 94, 169
NlaIII	CATG	8 cut(s)	78, 109, 467, 670, 735, 796, 875, 1003
NlaIV	GGNNCC	2 cut(s)	504, 977
NmuCI	GTSAC	2 cut(s)	433, 863
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	796, 875
PaeR7I	CTCGAG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	244
PciI	ACATGT	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	772
PctI	GAATGC	2 cut(s)	458, 580
PfeI	GAWTC	5 cut(s)	248, 359, 373, 614, 697
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	535, 1020, 1049
PleI	GAGTC	5 cut(s)	185, 391, 440, 625, 717
PpsI	GAGTC	5 cut(s)	185, 391, 440, 625, 717
PscI	ACATGT	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	2 cut(s)	504, 977
PspPI	GGNCC	2 cut(s)	446, 996
PspXI	VCTCGAGB	1 cut(s)	193
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PstI	CTGCAG	1 cut(s)	1049
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	5 cut(s)	71, 402, 894, 989, 1099
RsaNI	GTAC	5 cut(s)	70, 401, 893, 988, 1098
RseI	CAYNNNNRTG	2 cut(s)	652, 870
SaqAI	TTAA	2 cut(s)	81, 752
SatI	GCNGC	3 cut(s)	534, 1019, 1048
Sau3AI	GATC	3 cut(s)	3, 94, 169
Sau96I	GGNCC	2 cut(s)	446, 996
ScaI	AGTACT	2 cut(s)	71, 894
SchI	GAGTC	5 cut(s)	185, 392, 441, 625, 717
ScrFI	CCNGG	1 cut(s)	1065
SduI	GDGCHC	2 cut(s)	505, 978
SfaNI	GCATC	2 cut(s)	295, 818
SfcI	CTRYAG	1 cut(s)	1045
Sfr274I	CTCGAG	1 cut(s)	193
SinI	GGWCC	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	652, 870
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	314, 486, 518, 780
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	7 cut(s)	56, 297, 350, 512, 758, 801, 890
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	3 cut(s)	296, 800, 999
TaaI	ACNGT	3 cut(s)	147, 287, 684
TaqI	TCGA	2 cut(s)	194, 424
TasI	AATT	4 cut(s)	314, 486, 518, 780
TatI	WGTACW	4 cut(s)	69, 400, 892, 987
TfiI	GAWTC	5 cut(s)	248, 359, 373, 614, 697
Tru1I	TTAA	2 cut(s)	81, 752
Tru9I	TTAA	2 cut(s)	81, 752
TscAI	CASTG	4 cut(s)	220, 383, 629, 687
TseFI	GTSAC	2 cut(s)	433, 863
TseI	GCWGC	3 cut(s)	533, 1018, 1047
Tsp45I	GTSAC	2 cut(s)	433, 863
TspDTI	ATGAA	2 cut(s)	102, 710
TspRI	CASTG	4 cut(s)	220, 383, 629, 687
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	796, 875
XhoI	CTCGAG	1 cut(s)	193
XmaJI	CCTAGG	2 cut(s)	296, 800
XspI	CTAG	7 cut(s)	56, 297, 350, 512, 758, 801, 890
ZrmI	AGTACT	2 cut(s)	71, 894
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.