Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Forward (+)

5886548 .. 5894851

Gene Structure 8304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05640.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGAGAAACAAAGATGAAGCAGCTTCAATGTCTGCTCTTCATGACCATCATCTTCATCTTTGCATCCGTTGTCAAGTCGTCCGAGTTTGAGCTGGAGGATGAGGATGATGAACACTCGTGGCTTACCGATGAAGATGATCGGGTGAACATGGTTCAGAGCCACCACAGTTCAAGAAGAAAGTGTCAACTTTCGGCCGGAAAGTGGGTTTATGATCAATCCTACCCTCTCTATGACTCTACCTGTCCATATCTTAGCACTGCCGTCACTTGTCAAAAAAATGGAAGGCCGGATTCCGACTACGAAAAGTGGCGCTGGAAGCCAAACCGCTGCTCCATTCCCAGGTTTGATGCATTGAAATTTCTTGGCAAAATGAGAAGGAAAAGAATAATGTTGGTGGGTGATTCTATAATGAGGAATCAGTGGGAGTCTCTTGTGTGTTTAGTACAAGGAGTTGTTCCAACAGCTCGAAAGAGAGTCACCTACAATGGTCCTTCTATGGCATTCCATGCAATGGACTTTGAGGTATCCATTGAGTTTACATGGGCTCCACTCCTAGTAGAACTGAACAAGGGAGCTGCAAACAAGAGGATTTTGCATTTGGATTTGATAGAGGAGAATGCAAAGTACTGGAGAGGAGTTGATGTCCTTGTTTTTGATTCAGCTCACTGGTGGACTCACTCTGACAAAACATCGTCGTGGGATTACTACATGGAGGGCAAATCTCTGTTTACAAGTATGAATCCAATGGTTGCATACCAGAAAGGACTCACTACATGGGCTAAATGGGTTGATTTAAACTTAGACCCTCGCAAGACCCGAGTAATTTTCCGAAGCATGTCCCCTAGGCATAACAGAGAAAATGGTTGGAGATGCTACAATCAGAAGCAGCCTTTGGCAAATTTCAGTCATCAACATGTTCCTGAACCTCTGCTGGTGCTACAAGGGGTATTGAGAAAAATGAGATTTCCAGTTTATCTTCAGGACATAACCACAATATCGGCGTTTAGAAGAGACGGACACCCTTCGGTGTATAGAAGGGCCATGGGACAAGAAGAGAAGCAGCACCTGAGAGAGTATTCATCGGACTGCAGCCATTGGTGTCTTCCTGGTGTACCTGATATCTGGAATGAGATGTTGAGTGCCTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

385

Amino Acids

45.22

Weight (kDa)

8.83

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	61 - 112	3.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 382	1.3e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	514
AciI	CCGC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	359, 901
AcuI	CTGAAG	1 cut(s)	965
AfaI	GTAC	3 cut(s)	447, 629, 1116
AfiI	CCNNNNNNNGG	3 cut(s)	204, 342, 514
AflIII	ACRYGT	1 cut(s)	916
AgsI	TTSAA	3 cut(s)	29, 174, 358
AjnI	CCWGG	2 cut(s)	341, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	5 cut(s)	25, 94, 467, 578, 665
AluI	AGCT	5 cut(s)	25, 94, 467, 578, 665
Alw26I	GTCTC	2 cut(s)	435, 1008
AlwNI	CAGNNNCTG	1 cut(s)	1069
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	3 cut(s)	195, 287, 1041
ApeKI	GCWGC	6 cut(s)	22, 330, 578, 889, 1063, 1092
ApoI	RAATTY	2 cut(s)	359, 901
AspA2I	CCTAGG	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	491, 1041
AsuHPI	GGTGA	3 cut(s)	157, 413, 472
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	1 cut(s)	491
AvrII	CCTAGG	1 cut(s)	845
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	1097
BbvI	GCAGC	6 cut(s)	34, 317, 565, 901, 1075, 1104
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	343, 1110
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	435, 1008
BfaI	CTAG	2 cut(s)	557, 846
BfmI	CTRYAG	1 cut(s)	1090
BfoI	RGCGCY	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	6 cut(s)	23, 331, 579, 890, 1064, 1093
BlnI	CCTAGG	1 cut(s)	845
BlsI	GCNGC	6 cut(s)	24, 332, 580, 891, 1065, 1094
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	343, 1110
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	2 cut(s)	491, 1041
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	343, 1110
BmsI	GCATC	3 cut(s)	74, 340, 863
BpiI	GAAGAC	1 cut(s)	1097
BpmI	CTGGAG	2 cut(s)	116, 652
BsaJI	CCNNGG	3 cut(s)	341, 845, 1044
BsaXI	ACNNNNNCTCC	6 cut(s)	317, 347, 532, 562, 630, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 342, 514
Bse1I	ACTGG	3 cut(s)	635, 674, 971
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	343, 1110
BseDI	CCNNGG	3 cut(s)	341, 845, 1044
BseGI	GGATG	3 cut(s)	65, 106, 112
BseLI	CCNNNNNNNGG	3 cut(s)	204, 342, 514
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	1061
BseNI	ACTGG	3 cut(s)	635, 674, 971
BseRI	GAGGAG	2 cut(s)	629, 651
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	6 cut(s)	34, 317, 565, 901, 1075, 1104
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	197, 289, 1043
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	198, 290
BslFI	GGGAC	2 cut(s)	826, 1062
BslI	CCNNNNNNNGG	3 cut(s)	204, 342, 514
BsmAI	GTCTC	2 cut(s)	435, 1008
BsmBI	CGTCTC	1 cut(s)	1008
BsmFI	GGGAC	2 cut(s)	826, 1062
BsmI	GAATGC	2 cut(s)	503, 625
BsnI	GGCC	3 cut(s)	197, 289, 1043
BsoBI	CYCGRG	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	139, 214
Bsp19I	CCATGG	1 cut(s)	1044
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	3 cut(s)	197, 289, 1043
BspCNI	CTCAG	1 cut(s)	1062
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	549
BspMAI	CTGCAG	1 cut(s)	1094
BspQI	GCTCTTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	635, 674, 971
BssECI	CCNNGG	3 cut(s)	341, 845, 1044
BssMI	GATC	2 cut(s)	139, 214
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	845, 1044
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	343, 1110
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	3 cut(s)	44, 1006, 1050
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	254, 802, 1070
BstDSI	CCRYGG	1 cut(s)	1044
BstF5I	GGATG	3 cut(s)	65, 106, 112
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	142, 217
BstMAI	GTCTC	2 cut(s)	435, 1008
BstMBI	GATC	2 cut(s)	139, 214
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 509
BstNI	CCWGG	2 cut(s)	343, 1110
BstNSI	RCATGY	2 cut(s)	841, 920
BstSCI	CCNGG	2 cut(s)	341, 1108
BstSFI	CTRYAG	1 cut(s)	1090
BstV1I	GCAGC	6 cut(s)	34, 317, 565, 901, 1075, 1104
BstV2I	GAAGAC	1 cut(s)	1097
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	197, 289, 1043
BtgI	CCRYGG	1 cut(s)	1044
BtsCI	GGATG	3 cut(s)	65, 106, 112
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 428, 667
CaiI	CAGNNNCTG	1 cut(s)	1069
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	491, 1041
Csp6I	GTAC	3 cut(s)	446, 628, 1115
CviAII	CATG	9 cut(s)	43, 151, 509, 543, 712, 777, 838, 917, 1045
CviQI	GTAC	3 cut(s)	446, 628, 1115
DdeI	CTNAG	3 cut(s)	254, 802, 1070
DpnI	GATC	2 cut(s)	141, 216
DpnII	GATC	2 cut(s)	139, 214
DraI	TTTAAA	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	3 cut(s)	44, 1006, 1050
EarI	CTCTTC	3 cut(s)	44, 1006, 1050
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	845, 1044
Eco24I	GRGCYC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	1123
Eco47I	GGWCC	1 cut(s)	491
Eco52I	CGGCCG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	965
Eco88I	CYCGRG	1 cut(s)	819
EcoRII	CCWGG	2 cut(s)	341, 1108
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	2 cut(s)	845, 1044
EcoT22I	ATGCAT	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	845, 1044
Esp3I	CGTCTC	1 cut(s)	1008
FaeI	CATG	9 cut(s)	46, 154, 512, 546, 715, 780, 841, 920, 1048
FaqI	GGGAC	2 cut(s)	826, 1062
FatI	CATG	9 cut(s)	42, 150, 508, 542, 711, 776, 837, 916, 1044
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	23, 331, 579, 890, 1064, 1093
FokI	GGATG	3 cut(s)	52, 113, 119
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	6 cut(s)	23, 331, 579, 890, 1064, 1093
FspBI	CTAG	2 cut(s)	557, 846
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	6 cut(s)	23, 331, 579, 890, 1064, 1093
GsuI	CTGGAG	2 cut(s)	116, 652
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	197, 289, 1043
HapII	CCGG	2 cut(s)	198, 290
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	9 cut(s)	46, 154, 512, 546, 715, 780, 841, 920, 1048
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	198, 290
HphI	GGTGA	3 cut(s)	157, 413, 472
Hpy166II	GTNNAC	6 cut(s)	148, 188, 540, 675, 732, 1115
Hpy188I	TCNGA	7 cut(s)	85, 159, 298, 685, 833, 885, 1087
Hpy188III	TCNNGA	5 cut(s)	43, 174, 923, 983, 1126
Hpy8I	GTNNAC	6 cut(s)	148, 188, 540, 675, 732, 1115
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	5 cut(s)	279, 372, 504, 1032, 1035
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	8 cut(s)	65, 353, 512, 581, 598, 623, 755, 1092
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 509
HpyF3I	CTNAG	3 cut(s)	254, 802, 1070
Hsp92II	CATG	9 cut(s)	46, 154, 512, 546, 715, 780, 841, 920, 1048
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	139, 214
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	3 cut(s)	338, 553, 575
Lsp1109I	GCAGC	6 cut(s)	34, 317, 565, 901, 1075, 1104
LweI	GCATC	3 cut(s)	74, 340, 863
MaeI	CTAG	2 cut(s)	557, 846
MaeIII	GTNAC	2 cut(s)	265, 478
MalI	GATC	2 cut(s)	141, 216
MboI	GATC	2 cut(s)	139, 214
MboII	GAAGA	8 cut(s)	31, 46, 146, 189, 971, 1023, 1067, 1097
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	3 cut(s)	359, 825, 901
MlyI	GAGTC	5 cut(s)	230, 437, 486, 670, 762
MmeI	TCCRAC	3 cut(s)	321, 485, 848
Mph1103I	ATGCAT	1 cut(s)	355
MseI	TTAA	1 cut(s)	797
MslI	CAYNNNNRTG	2 cut(s)	697, 915
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	2 cut(s)	198, 290
MspR9I	CCNGG	2 cut(s)	343, 1110
Mva1269I	GAATGC	2 cut(s)	503, 625
MvaI	CCWGG	2 cut(s)	343, 1110
MwoI	GCNNNNNNNGC	2 cut(s)	319, 509
NcoI	CCATGG	1 cut(s)	1044
NdeII	GATC	2 cut(s)	139, 214
NlaIII	CATG	9 cut(s)	46, 154, 512, 546, 715, 780, 841, 920, 1048
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	2 cut(s)	265, 478
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	2 cut(s)	841, 920
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	817
PctI	GAATGC	2 cut(s)	503, 625
PfeI	GAWTC	5 cut(s)	293, 404, 418, 659, 742
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	6 cut(s)	24, 332, 580, 891, 1065, 1094
PleI	GAGTC	5 cut(s)	230, 436, 485, 670, 762
PpsI	GAGTC	5 cut(s)	230, 436, 485, 670, 762
PscI	ACATGT	1 cut(s)	916
Psp6I	CCWGG	2 cut(s)	341, 1108
PspGI	CCWGG	2 cut(s)	341, 1108
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	491, 1041
PstI	CTGCAG	1 cut(s)	1094
PstNI	CAGNNNCTG	1 cut(s)	1069
RsaI	GTAC	3 cut(s)	447, 629, 1116
RsaNI	GTAC	3 cut(s)	446, 628, 1115
RseI	CAYNNNNRTG	2 cut(s)	697, 915
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	797
SatI	GCNGC	6 cut(s)	23, 331, 579, 890, 1064, 1093
Sau3AI	GATC	2 cut(s)	139, 214
Sau96I	GGNCC	2 cut(s)	491, 1041
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	5 cut(s)	230, 437, 486, 670, 762
ScrFI	CCNGG	2 cut(s)	343, 1110
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	74, 340, 863
SfcI	CTRYAG	1 cut(s)	1090
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	697, 915
Sse9I	AATT	3 cut(s)	359, 825, 901
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	557, 846
StyD4I	CCNGG	2 cut(s)	341, 1108
StyI	CCWWGG	2 cut(s)	845, 1044
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	469
TasI	AATT	3 cut(s)	359, 825, 901
TatI	WGTACW	2 cut(s)	445, 627
TfiI	GAWTC	5 cut(s)	293, 404, 418, 659, 742
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TscAI	CASTG	3 cut(s)	265, 428, 674
TseFI	GTSAC	2 cut(s)	265, 478
TseI	GCWGC	6 cut(s)	22, 330, 578, 889, 1063, 1092
Tsp45I	GTSAC	2 cut(s)	265, 478
TspDTI	ATGAA	7 cut(s)	31, 32, 46, 126, 147, 755, 1071
TspGWI	ACGGA	2 cut(s)	58, 1032
TspRI	CASTG	3 cut(s)	265, 428, 674
Van91I	CCANNNNNTGG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	359, 901
XceI	RCATGY	2 cut(s)	841, 920
XmaJI	CCTAGG	1 cut(s)	845
XspI	CTAG	2 cut(s)	557, 846
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.