Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Forward (+)

44264789 .. 44266387

Gene Structure 1599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATCCTTATCTTTGTATGCGTTGTTCCAGCTGTGAAGTCATCAGGGTTTGAGCTAGAGGAGGATGAGTACTCATGGCTTAACGATGAAGATGATCAGGCTAACATGGTTCAGAGCCACCAAAGTTCAAGAAGCAAGTGTGAACTGTCTGCCGGAAAGTGGGTTTATGATCAATCCTACCCTCTCTATGACTCGAGCTGTCCATATCTTAGCACTGCTGTCACTTGTCAGAAAAATGGAAGGCCTGATTCCGACTATGAAAAGTGGCGCTGGAAGCCAACCCAGTGTTCCATTCCTAGGTTTGATGCATTGAAATTTCTTGGTCGAAAGAGAGTCACCTACAATGGTCCTTCTATGGCATTCCATGCAATGGATTTTGGGACATCAATTGAGTTTTCTTGGGCTCCACTCCTAGTAGAATTGAACAAGGGAGCTGCAAACAAGAGGATTTTGCATTTGGATTTGATAGAGAAGAATGCAAAGTATTGGAGAGGAGTTGATGTTCTTGTTTTTGATTCAGCTCACTGGTGGACTCACTCTGACAAAACATCGTCGTGGGATTACTACATGGAAGGACAATCCCTGTTTACAAATATGAATCCAATGGTTGCATACCAGAAAGGACTCACTACATGGGCTAAATGGGTTGATTTAAACCTAGACCCGAGTAAGACCCGAGTAATTTTCCGAAGCATGTCACCTAGGCATAACAGAGAAAATGGTTGGAGATGCTACAATCAGAAGAAGCCTCTAGCTTATTTCAGTCACCAACATGTTCCTGAACCTCTGCTAGTACTGCAAGGGGTATTGAGAAAGATGAGATTTCCGGTTTATCTTCTGGACATAACCACAATCTCAGCGTTTAGAAGAGACGGCCACCCTTCTGTGTACAGACGGGCCATGGGACAGGAAGAGAAGCAGCACCTGAGAGAGTATTCTTCGGACTGCAGCCATTGGTGTCTTCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTACCTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

336

Amino Acids

39.22

Weight (kDa)

8.04

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	46 - 97	1.1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 334	1.9e-63	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	4 cut(s)	71, 795, 890, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	159, 297, 370
AflIII	ACRYGT	1 cut(s)	772
AgsI	TTSAA	3 cut(s)	129, 313, 424
AjnI	CCWGG	1 cut(s)	964
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	6 cut(s)	32, 55, 198, 434, 521, 755
AluI	AGCT	6 cut(s)	32, 55, 198, 434, 521, 755
Alw26I	GTCTC	1 cut(s)	864
AlwNI	CAGNNNCTG	1 cut(s)	925
Ama87I	CYCGRG	3 cut(s)	193, 664, 675
AoxI	GGCC	3 cut(s)	242, 874, 897
ApeKI	GCWGC	3 cut(s)	434, 919, 948
ApoI	RAATTY	1 cut(s)	314
AspA2I	CCTAGG	2 cut(s)	296, 701
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	347, 897
AsuHPI	GGTGA	3 cut(s)	328, 690, 758
AvaI	CYCGRG	3 cut(s)	193, 664, 675
AvaII	GGWCC	1 cut(s)	347
AvrII	CCTAGG	2 cut(s)	296, 701
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	953
BbvI	GCAGC	3 cut(s)	421, 931, 960
BceAI	ACGGC	1 cut(s)	889
BciT130I	CCWGG	1 cut(s)	966
BclI	TGATCA	2 cut(s)	94, 169
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	7 cut(s)	56, 297, 413, 659, 702, 752, 791
BfmI	CTRYAG	1 cut(s)	946
BfoI	RGCGCY	1 cut(s)	271
BisI	GCNGC	3 cut(s)	435, 920, 949
BlnI	CCTAGG	2 cut(s)	296, 701
BlsI	GCNGC	3 cut(s)	436, 921, 950
BmcAI	AGTACT	2 cut(s)	71, 795
Bme1390I	CCNGG	1 cut(s)	966
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	3 cut(s)	193, 664, 675
BmgT120I	GGNCC	2 cut(s)	347, 897
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	966
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	295, 719
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	953
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	296, 701, 900
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 297, 370
Bse1I	ACTGG	2 cut(s)	283, 530
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	3 cut(s)	296, 701, 900
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	159, 297, 370
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	870, 917
BseNI	ACTGG	2 cut(s)	283, 530
BseRI	GAGGAG	2 cut(s)	74, 507
BseXI	GCAGC	3 cut(s)	421, 931, 960
BshFI	GGCC	3 cut(s)	244, 876, 899
BsiHKCI	CYCGRG	3 cut(s)	193, 664, 675
BsiSI	CCGG	2 cut(s)	153, 827
BslFI	GGGAC	2 cut(s)	394, 918
BslI	CCNNNNNNNGG	3 cut(s)	159, 297, 370
BsmAI	GTCTC	1 cut(s)	864
BsmBI	CGTCTC	1 cut(s)	864
BsmFI	GGGAC	2 cut(s)	394, 918
BsmI	GAATGC	2 cut(s)	359, 481
BsnI	GGCC	3 cut(s)	244, 876, 899
BsoBI	CYCGRG	3 cut(s)	193, 664, 675
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	3 cut(s)	3, 94, 169
Bsp19I	CCATGG	1 cut(s)	900
BspANI	GGCC	3 cut(s)	244, 876, 899
BspCNI	CTCAG	2 cut(s)	869, 918
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	2 cut(s)	283, 530
BssECI	CCNNGG	3 cut(s)	296, 701, 900
BssMI	GATC	3 cut(s)	3, 94, 169
BssT1I	CCWWGG	3 cut(s)	296, 701, 900
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	862, 906
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	888
BstDEI	CTNAG	3 cut(s)	209, 856, 926
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	6, 97, 172
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	3 cut(s)	3, 94, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 365, 796
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	2 cut(s)	697, 776
BstSCI	CCNGG	1 cut(s)	964
BstSFI	CTRYAG	1 cut(s)	946
BstV1I	GCAGC	3 cut(s)	421, 931, 960
BstV2I	GAAGAC	1 cut(s)	953
BsuRI	GGCC	3 cut(s)	244, 876, 899
BtgI	CCRYGG	1 cut(s)	900
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 290, 523
CaiI	CAGNNNCTG	1 cut(s)	925
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	347, 897
Csp6I	GTAC	4 cut(s)	70, 794, 889, 999
CviAII	CATG	8 cut(s)	75, 106, 365, 568, 633, 694, 773, 901
CviQI	GTAC	4 cut(s)	70, 794, 889, 999
DdeI	CTNAG	3 cut(s)	209, 856, 926
DpnI	GATC	3 cut(s)	5, 96, 171
DpnII	GATC	3 cut(s)	3, 94, 169
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	2 cut(s)	862, 906
EarI	CTCTTC	2 cut(s)	862, 906
Eco130I	CCWWGG	3 cut(s)	296, 701, 900
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	347
Eco88I	CYCGRG	3 cut(s)	193, 664, 675
EcoRII	CCWGG	1 cut(s)	964
EcoT14I	CCWWGG	3 cut(s)	296, 701, 900
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	3 cut(s)	296, 701, 900
Esp3I	CGTCTC	1 cut(s)	864
FaeI	CATG	8 cut(s)	78, 109, 368, 571, 636, 697, 776, 904
FaqI	GGGAC	2 cut(s)	394, 918
FatI	CATG	8 cut(s)	74, 105, 364, 567, 632, 693, 772, 900
FbaI	TGATCA	2 cut(s)	94, 169
Fnu4HI	GCNGC	3 cut(s)	435, 920, 949
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	435, 920, 949
FspBI	CTAG	7 cut(s)	56, 297, 413, 659, 702, 752, 791
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	3 cut(s)	435, 920, 949
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	244, 876, 899
HapII	CCGG	2 cut(s)	153, 827
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	8 cut(s)	78, 109, 368, 571, 636, 697, 776, 904
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	7 cut(s)	191, 248, 333, 515, 532, 598, 624
HpaII	CCGG	2 cut(s)	153, 827
HphI	GGTGA	3 cut(s)	328, 690, 758
Hpy166II	GTNNAC	4 cut(s)	143, 531, 588, 889
Hpy188I	TCNGA	7 cut(s)	114, 231, 253, 541, 689, 741, 943
Hpy188III	TCNNGA	3 cut(s)	129, 779, 839
Hpy8I	GTNNAC	4 cut(s)	143, 531, 588, 889
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	4 cut(s)	234, 360, 566, 891
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	8 cut(s)	308, 368, 437, 454, 479, 611, 799, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 365, 796
HpyF3I	CTNAG	3 cut(s)	209, 856, 926
Hsp92II	CATG	8 cut(s)	78, 109, 368, 571, 636, 697, 776, 904
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	2 cut(s)	94, 169
Kzo9I	GATC	3 cut(s)	3, 94, 169
LmnI	GCTCC	2 cut(s)	409, 431
Lsp1109I	GCAGC	3 cut(s)	421, 931, 960
LweI	GCATC	2 cut(s)	295, 719
MaeI	CTAG	7 cut(s)	56, 297, 413, 659, 702, 752, 791
MaeIII	GTNAC	4 cut(s)	220, 334, 696, 764
MalI	GATC	3 cut(s)	5, 96, 171
MboI	GATC	3 cut(s)	3, 94, 169
MboII	GAAGA	8 cut(s)	101, 484, 754, 827, 879, 923, 930, 953
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	4 cut(s)	314, 387, 419, 681
MlyI	GAGTC	4 cut(s)	185, 342, 526, 618
MmeI	TCCRAC	2 cut(s)	276, 704
MnlI	CCTC	7 cut(s)	52, 55, 192, 438, 485, 759, 795
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	81, 653
MslI	CAYNNNNRTG	2 cut(s)	553, 771
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	153, 827
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	2 cut(s)	359, 481
MvaI	CCWGG	1 cut(s)	966
MwoI	GCNNNNNNNGC	3 cut(s)	274, 365, 796
NcoI	CCATGG	1 cut(s)	900
NdeII	GATC	3 cut(s)	3, 94, 169
NlaIII	CATG	8 cut(s)	78, 109, 368, 571, 636, 697, 776, 904
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	4 cut(s)	220, 334, 696, 764
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	697, 776
PaeR7I	CTCGAG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	244
PciI	ACATGT	1 cut(s)	772
PctI	GAATGC	2 cut(s)	359, 481
PfeI	GAWTC	3 cut(s)	248, 515, 598
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	436, 921, 950
PleI	GAGTC	4 cut(s)	185, 341, 526, 618
PpsI	GAGTC	4 cut(s)	185, 341, 526, 618
PscI	ACATGT	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	347, 897
PspXI	VCTCGAGB	1 cut(s)	193
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PstI	CTGCAG	1 cut(s)	950
PstNI	CAGNNNCTG	1 cut(s)	925
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	71, 795, 890, 1000
RsaNI	GTAC	4 cut(s)	70, 794, 889, 999
RseI	CAYNNNNRTG	2 cut(s)	553, 771
SaqAI	TTAA	2 cut(s)	81, 653
SatI	GCNGC	3 cut(s)	435, 920, 949
Sau3AI	GATC	3 cut(s)	3, 94, 169
Sau96I	GGNCC	2 cut(s)	347, 897
ScaI	AGTACT	2 cut(s)	71, 795
SchI	GAGTC	4 cut(s)	185, 342, 526, 618
ScrFI	CCNGG	1 cut(s)	966
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	295, 719
SfcI	CTRYAG	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	193
SinI	GGWCC	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	553, 771
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	314, 387, 419, 681
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	7 cut(s)	56, 297, 413, 659, 702, 752, 791
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	964
StyI	CCWWGG	3 cut(s)	296, 701, 900
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	194, 325
TasI	AATT	4 cut(s)	314, 387, 419, 681
TatI	WGTACW	3 cut(s)	69, 793, 888
TfiI	GAWTC	3 cut(s)	248, 515, 598
Tru1I	TTAA	2 cut(s)	81, 653
Tru9I	TTAA	2 cut(s)	81, 653
TscAI	CASTG	3 cut(s)	220, 290, 530
TseFI	GTSAC	4 cut(s)	220, 334, 696, 764
TseI	GCWGC	3 cut(s)	434, 919, 948
Tsp45I	GTSAC	4 cut(s)	220, 334, 696, 764
TspDTI	ATGAA	3 cut(s)	102, 273, 611
TspRI	CASTG	3 cut(s)	220, 290, 530
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	697, 776
XhoI	CTCGAG	1 cut(s)	193
XmaJI	CCTAGG	2 cut(s)	296, 701
XspI	CTAG	7 cut(s)	56, 297, 413, 659, 702, 752, 791
ZrmI	AGTACT	2 cut(s)	71, 795
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.