Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Reverse (-)

23183013 .. 23184648

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG124500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGAGAAAACAAGCTACTTCAATGTCTGCTCTTCTTGAGCATGATCTTTATCTTTGTATGCGTTGTTCCAGCTGTGAAGTCATCAGCGTTTGAGCTAGAGGAGGATGAGTACTCATGGCTTAACGATGAAGATGATCAGGCTAACATGGTTCAGAGCCACCAAAGTTCAAGAAGCAAGTGTGAACTATCTGCCGGAAAGTGGGTTTATGATCAATCCTACCCTCTCTATGACTCGAGCTGTCCATATCTTAGCACTGCCGTCACTTGTCAGAAAAATGGAAGGCCTGATTCCGACTACGAAAAGTGGCGCTGGAAGCCAAACCGCTGCTCCATTCCTAGGTTTGATGCATTGAAATTTCTTGGTAAAATGAGAAAAAAAAGAATAATGCTAGTGGGTGATTCTATAATGAGGAATCAGTGGGAGTCTCTTGTGTGCTTAGTACAAGGAGTTGTTCCAACAGGTCGAAAGAGAGTCACCTACAATGGTCCTTCTATGGCATTCCATGCAATGGACTTTGGGACATCAATTGAGTTTTCTTGGGCTCCACTCCTAGTAGAATTGAACAAGGGAGCTGCAAACAAGAGGATTTTGCATTTGGATTTGATAGAGAAGAATGCAAAGTATTGGAGAGGAGTTGATGTTCTTGTTTTTGATTCAGCTCACTGGTGGACTCACTCTGACAAAACATCGTCGTGGGATTACTACATGGAAGGACAATCACTGTTTACAAATATGAATCCAATGGTTGCATACCAGAAAGGACTCACTACATGGGCTAAATGGGTTGATTTAAACCTAGACCCGAGTAAGACCCGAGTAATTTTCCGAAGCATGTCACCTAGGCATAACAGAGAAAATGGTTGGAGATGCTACAATCAGAAGAAGCCTCTAGCTTATTTCAGTCACCAACATGTTCCTGAACCTCTGCTAGTACTGCAAGGGGTATTGAGAAAGATGAGATTTCCAGTTTATCTTCTGGACATAACCACAATCTCAGCGTTTAGAAGAGACGGCCACCCTTCTGTGTACAGACGGGCCATGGGACAGGAAGAGAAGCAGCACCTGAGAGAGTATTCGTCGGACTGCAGCCATTGGTGTCTTCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTACCTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

383

Amino Acids

44.76

Weight (kDa)

8.87

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	60 - 111	1.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	112 - 381	1.6e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	511
AciI	CCGC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	1015
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	5 cut(s)	113, 444, 936, 1031, 1141
AfiI	CCNNNNNNNGG	3 cut(s)	201, 339, 511
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	4 cut(s)	23, 171, 355, 565
AjnI	CCWGG	1 cut(s)	1105
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	7 cut(s)	16, 74, 97, 240, 575, 662, 896
AluI	AGCT	7 cut(s)	16, 74, 97, 240, 575, 662, 896
Alw26I	GTCTC	2 cut(s)	432, 1005
AlwNI	CAGNNNCTG	1 cut(s)	1066
Ama87I	CYCGRG	3 cut(s)	235, 805, 816
AoxI	GGCC	3 cut(s)	284, 1015, 1038
ApeKI	GCWGC	4 cut(s)	327, 575, 1060, 1089
ApoI	RAATTY	1 cut(s)	356
AspA2I	CCTAGG	2 cut(s)	338, 842
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	488, 1038
AsuHPI	GGTGA	4 cut(s)	410, 469, 831, 899
AvaI	CYCGRG	3 cut(s)	235, 805, 816
AvaII	GGWCC	1 cut(s)	488
AvrII	CCTAGG	2 cut(s)	338, 842
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	1094
BbvI	GCAGC	4 cut(s)	314, 562, 1072, 1101
BceAI	ACGGC	2 cut(s)	245, 1030
BciT130I	CCWGG	1 cut(s)	1107
BclI	TGATCA	2 cut(s)	136, 211
BcoDI	GTCTC	2 cut(s)	432, 1005
BfaI	CTAG	8 cut(s)	98, 339, 392, 554, 800, 843, 893, 932
BfmI	CTRYAG	1 cut(s)	1087
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	4 cut(s)	328, 576, 1061, 1090
BlnI	CCTAGG	2 cut(s)	338, 842
BlsI	GCNGC	4 cut(s)	329, 577, 1062, 1091
BmcAI	AGTACT	2 cut(s)	113, 936
Bme1390I	CCNGG	1 cut(s)	1107
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	3 cut(s)	235, 805, 816
BmgT120I	GGNCC	2 cut(s)	488, 1038
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	1107
BmsI	GCATC	2 cut(s)	337, 860
BpiI	GAAGAC	1 cut(s)	1094
BpuEI	CTTGAG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	338, 842, 1041
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 314, 344, 627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 339, 511
Bse1I	ACTGG	2 cut(s)	671, 968
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	1107
BseDI	CCNNGG	3 cut(s)	338, 842, 1041
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	201, 339, 511
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	1011, 1058
BseNI	ACTGG	2 cut(s)	671, 968
BseRI	GAGGAG	2 cut(s)	116, 648
BseXI	GCAGC	4 cut(s)	314, 562, 1072, 1101
BshFI	GGCC	3 cut(s)	286, 1017, 1040
BsiHKCI	CYCGRG	3 cut(s)	235, 805, 816
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	535, 1059
BslI	CCNNNNNNNGG	3 cut(s)	201, 339, 511
BsmAI	GTCTC	2 cut(s)	432, 1005
BsmBI	CGTCTC	1 cut(s)	1005
BsmFI	GGGAC	2 cut(s)	535, 1059
BsmI	GAATGC	2 cut(s)	500, 622
BsnI	GGCC	3 cut(s)	286, 1017, 1040
BsoBI	CYCGRG	3 cut(s)	235, 805, 816
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	1029
Bsp143I	GATC	3 cut(s)	45, 136, 211
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	3 cut(s)	286, 1017, 1040
BspCNI	CTCAG	2 cut(s)	1010, 1059
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	1091
BspQI	GCTCTTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	1029
BsrI	ACTGG	2 cut(s)	671, 968
BssECI	CCNNGG	3 cut(s)	338, 842, 1041
BssMI	GATC	3 cut(s)	45, 136, 211
BssT1I	CCWWGG	3 cut(s)	338, 842, 1041
Bst2UI	CCWGG	1 cut(s)	1107
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	3 cut(s)	38, 1003, 1047
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	1029
BstDEI	CTNAG	4 cut(s)	251, 439, 997, 1067
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	3 cut(s)	48, 139, 214
BstMAI	GTCTC	2 cut(s)	432, 1005
BstMBI	GATC	3 cut(s)	45, 136, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 506, 937
BstNI	CCWGG	1 cut(s)	1107
BstNSI	RCATGY	2 cut(s)	838, 917
BstSCI	CCNGG	1 cut(s)	1105
BstSFI	CTRYAG	1 cut(s)	1087
BstV1I	GCAGC	4 cut(s)	314, 562, 1072, 1101
BstV2I	GAAGAC	1 cut(s)	1094
BsuRI	GGCC	3 cut(s)	286, 1017, 1040
BtgI	CCRYGG	1 cut(s)	1041
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	255, 425, 664, 722
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	488, 1038
Csp6I	GTAC	5 cut(s)	112, 443, 935, 1030, 1140
CviAII	CATG	9 cut(s)	43, 117, 148, 506, 709, 774, 835, 914, 1042
CviQI	GTAC	5 cut(s)	112, 443, 935, 1030, 1140
DdeI	CTNAG	4 cut(s)	251, 439, 997, 1067
DpnI	GATC	3 cut(s)	47, 138, 213
DpnII	GATC	3 cut(s)	45, 136, 211
DraI	TTTAAA	1 cut(s)	795
EaeI	YGGCCR	1 cut(s)	1015
Eam1104I	CTCTTC	3 cut(s)	38, 1003, 1047
EarI	CTCTTC	3 cut(s)	38, 1003, 1047
Eco130I	CCWWGG	3 cut(s)	338, 842, 1041
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	488
Eco88I	CYCGRG	3 cut(s)	235, 805, 816
EcoRII	CCWGG	1 cut(s)	1105
EcoT14I	CCWWGG	3 cut(s)	338, 842, 1041
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	3 cut(s)	338, 842, 1041
Esp3I	CGTCTC	1 cut(s)	1005
FaeI	CATG	9 cut(s)	46, 120, 151, 509, 712, 777, 838, 917, 1045
FaqI	GGGAC	2 cut(s)	535, 1059
FatI	CATG	9 cut(s)	42, 116, 147, 505, 708, 773, 834, 913, 1041
FbaI	TGATCA	2 cut(s)	136, 211
Fnu4HI	GCNGC	4 cut(s)	328, 576, 1061, 1090
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	4 cut(s)	328, 576, 1061, 1090
FspBI	CTAG	8 cut(s)	98, 339, 392, 554, 800, 843, 893, 932
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	328, 576, 1061, 1090
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	286, 1017, 1040
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	9 cut(s)	46, 120, 151, 509, 712, 777, 838, 917, 1045
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	4 cut(s)	410, 469, 831, 899
Hpy166II	GTNNAC	4 cut(s)	185, 672, 729, 1030
Hpy188I	TCNGA	7 cut(s)	156, 273, 295, 682, 830, 882, 1084
Hpy188III	TCNNGA	4 cut(s)	37, 171, 920, 980
Hpy8I	GTNNAC	4 cut(s)	185, 672, 729, 1030
Hpy99I	CGWCG	2 cut(s)	697, 1084
HpyAV	CCTTC	4 cut(s)	276, 501, 707, 1032
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4V	TGCA	8 cut(s)	350, 509, 578, 595, 620, 752, 940, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 506, 937
HpyF3I	CTNAG	4 cut(s)	251, 439, 997, 1067
Hsp92II	CATG	9 cut(s)	46, 120, 151, 509, 712, 777, 838, 917, 1045
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	136, 211
Kzo9I	GATC	3 cut(s)	45, 136, 211
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	335, 550, 572
Lsp1109I	GCAGC	4 cut(s)	314, 562, 1072, 1101
LweI	GCATC	2 cut(s)	337, 860
MaeI	CTAG	8 cut(s)	98, 339, 392, 554, 800, 843, 893, 932
MaeIII	GTNAC	4 cut(s)	262, 475, 837, 905
MalI	GATC	3 cut(s)	47, 138, 213
MboI	GATC	3 cut(s)	45, 136, 211
MboII	GAAGA	8 cut(s)	25, 143, 625, 895, 968, 1020, 1064, 1094
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	4 cut(s)	356, 528, 560, 822
MlyI	GAGTC	5 cut(s)	227, 434, 483, 667, 759
MmeI	TCCRAC	4 cut(s)	318, 482, 845, 1062
MnlI	CCTC	8 cut(s)	94, 97, 234, 405, 579, 626, 900, 936
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	2 cut(s)	123, 794
MslI	CAYNNNNRTG	2 cut(s)	694, 912
MspA1I	CMGCKG	2 cut(s)	74, 327
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	1107
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	2 cut(s)	500, 622
MvaI	CCWGG	1 cut(s)	1107
MwoI	GCNNNNNNNGC	3 cut(s)	316, 506, 937
NcoI	CCATGG	1 cut(s)	1041
NdeII	GATC	3 cut(s)	45, 136, 211
NlaIII	CATG	9 cut(s)	46, 120, 151, 509, 712, 777, 838, 917, 1045
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	4 cut(s)	262, 475, 837, 905
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	838, 917
PaeR7I	CTCGAG	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	286
PciI	ACATGT	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	2 cut(s)	500, 622
PfeI	GAWTC	5 cut(s)	290, 401, 415, 656, 739
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	329, 577, 1062, 1091
PleI	GAGTC	5 cut(s)	227, 433, 482, 667, 759
PpsI	GAGTC	5 cut(s)	227, 433, 482, 667, 759
PscI	ACATGT	1 cut(s)	913
Psp6I	CCWGG	1 cut(s)	1105
PspGI	CCWGG	1 cut(s)	1105
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	488, 1038
PspXI	VCTCGAGB	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	51, 83
PstI	CTGCAG	1 cut(s)	1091
PstNI	CAGNNNCTG	1 cut(s)	1066
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	5 cut(s)	113, 444, 936, 1031, 1141
RsaNI	GTAC	5 cut(s)	112, 443, 935, 1030, 1140
RseI	CAYNNNNRTG	2 cut(s)	694, 912
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	123, 794
SatI	GCNGC	4 cut(s)	328, 576, 1061, 1090
Sau3AI	GATC	3 cut(s)	45, 136, 211
Sau96I	GGNCC	2 cut(s)	488, 1038
ScaI	AGTACT	2 cut(s)	113, 936
SchI	GAGTC	5 cut(s)	227, 434, 483, 667, 759
ScrFI	CCNGG	1 cut(s)	1107
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	2 cut(s)	337, 860
SfcI	CTRYAG	1 cut(s)	1087
Sfr274I	CTCGAG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	694, 912
SmlI	CTYRAG	2 cut(s)	37, 235
SmoI	CTYRAG	2 cut(s)	37, 235
Sse9I	AATT	4 cut(s)	356, 528, 560, 822
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	8 cut(s)	98, 339, 392, 554, 800, 843, 893, 932
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	1105
StyI	CCWWGG	3 cut(s)	338, 842, 1041
TaaI	ACNGT	1 cut(s)	726
TaqI	TCGA	2 cut(s)	236, 466
TasI	AATT	4 cut(s)	356, 528, 560, 822
TatI	WGTACW	4 cut(s)	111, 442, 934, 1029
TfiI	GAWTC	5 cut(s)	290, 401, 415, 656, 739
Tru1I	TTAA	2 cut(s)	123, 794
Tru9I	TTAA	2 cut(s)	123, 794
TscAI	CASTG	4 cut(s)	262, 425, 671, 729
TseFI	GTSAC	4 cut(s)	262, 475, 837, 905
TseI	GCWGC	4 cut(s)	327, 575, 1060, 1089
Tsp45I	GTSAC	4 cut(s)	262, 475, 837, 905
TspDTI	ATGAA	2 cut(s)	144, 752
TspRI	CASTG	4 cut(s)	262, 425, 671, 729
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	2 cut(s)	838, 917
XhoI	CTCGAG	1 cut(s)	235
XmaJI	CCTAGG	2 cut(s)	338, 842
XspI	CTAG	8 cut(s)	98, 339, 392, 554, 800, 843, 893, 932
ZrmI	AGTACT	2 cut(s)	113, 936
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.