AT3G54880

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012853
Physical Location & Seq
Reverse (-)
20336687 .. 20338598
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54880.1

Sequence Viewer

Length: 339 bp
ATGGAGCTTTATACTGCAAATTGTCTGTCCACCGAAAACAAACCTACTCTTGAGCTTTCAAAACTAGTCAAAGACGAGAAAAGCTCGGTGAAAACGAACAGCGAAAACACCCTTACACTTGTGAATCATGGTGCAAAGATGTGGCAAGAGAACAGGGAAAAATGGGTGGGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGCTGGTCTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCCGAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

112

Amino Acids

13.03

Weight (kDa)

4.71

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 72 - 112 8.5e-10 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54880
fragaria_vesca FvH4_7g18580 FvH4_7g18670
malus_domestica MD01G1102400.v1.1
prunus_persica Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1
pyrus_communis pycom01g12880
rosa_chinensis RchiOBHm_Chr1g0362401
rosa_laevigata RLG00000027649
rosa_multiflora Rmu_sc0013947.1_g000008
rosa_roxburghii Rroxscaffold_4G00294210
rosa_rugosa Rorug01G0297800
rosa_samantha Rh1AG307000 Rh1BG270400 Rh1CG287900 Rh1DG300600
rosa_wichuraiana Rw1G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AasI GACNNNNNNGTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 224
AclWI GGATC 1 cut(s) 213
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 1 cut(s) 60
AhlI ACTAGT 1 cut(s) 64
AluBI AGCT 4 cut(s) 7, 55, 84, 219
AluI AGCT 4 cut(s) 7, 55, 84, 219
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 284
BccI CCATC 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpuEI CTTGAG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 284
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 284
Bsp143I GATC 3 cut(s) 172, 205, 238
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 253
BspPI GGATC 1 cut(s) 213
BssMI GATC 3 cut(s) 172, 205, 238
BstDEI CTNAG 1 cut(s) 267
BstKTI GATC 3 cut(s) 175, 208, 241
BstMBI GATC 3 cut(s) 172, 205, 238
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 253
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 128, 254
CviJI RGCY 5 cut(s) 7, 55, 84, 219, 327
CviKI_1 RGCY 5 cut(s) 7, 55, 84, 219, 327
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 174, 207, 240
DpnII GATC 3 cut(s) 172, 205, 238
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eco147I AGGCCT 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 284
FaeI CATG 2 cut(s) 131, 257
FaiI YATR 6 cut(s) 12, 129, 215, 232, 234, 255
FatI CATG 2 cut(s) 127, 253
FauNDI CATATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 224
FspBI CTAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 327
Hin1II CATG 2 cut(s) 131, 257
HinfI GANTC 3 cut(s) 124, 269, 274
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 30, 225, 295
Hpy188I TCNGA 2 cut(s) 210, 268
Hpy188III TCNNGA 3 cut(s) 50, 180, 254
Hpy8I GTNNAC 3 cut(s) 30, 225, 295
HpyAV CCTTC 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 17, 134, 200
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 131, 257
Kzo9I GATC 3 cut(s) 172, 205, 238
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 139, 205
MaeI CTAG 1 cut(s) 65
MalI GATC 3 cut(s) 174, 207, 240
MboI GATC 3 cut(s) 172, 205, 238
MboII GAAGA 2 cut(s) 233, 248
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 240
NdeI CATATG 1 cut(s) 232
NdeII GATC 3 cut(s) 172, 205, 238
NlaIII CATG 2 cut(s) 131, 257
PagI TCATGA 1 cut(s) 253
PceI AGGCCT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 124, 274
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 215
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
Sau3AI GATC 3 cut(s) 172, 205, 238
SchI GAGTC 1 cut(s) 278
SetI ASST 6 cut(s) 9, 46, 57, 86, 221, 262
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 1 cut(s) 19
SseBI AGGCCT 1 cut(s) 327
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 327
TaqI TCGA 3 cut(s) 181, 272, 306
TasI AATT 1 cut(s) 19
TfiI GAWTC 2 cut(s) 124, 274
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 249, 270, 336
TspRI CASTG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.