Rw1G027260

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012853
Physical Location & Seq
Forward (+)
54711075 .. 54714266
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027260.1

Sequence Viewer

Length: 327 bp
ATGGAGATGCGTACTGGAAATTCCCGTTCCAATAAAAAGCAATCTTTAGAGAATAACAAATCTGCCACTGAAGAGAAAAGTCCTGCAGAAAAAGAAGCAAACACTTCTGTATTTGTCAACTATGCTGCAATTGCTTGGCATGACAGTAGAAGAAAGTGGGTCGGGGATCAGCGGGTGCAAAGAATGGCCAAGGATCCAATTATAAGCTGGTCAACAGCGTATGAGGATCTACTTTCAACCAATGAGTGTTTCCCTGAGCCAATCCCTTTAACTGAGATGGTAGACTTTTTAGTTGATATTTGGCATGATGAAGGCCTGTTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

108

Amino Acids

12.48

Weight (kDa)

4.9

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 68 - 108 5e-10 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54880
fragaria_vesca FvH4_7g18580 FvH4_7g18670
malus_domestica MD01G1102400.v1.1
prunus_persica Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1
pyrus_communis pycom01g12880
rosa_chinensis RchiOBHm_Chr1g0362401
rosa_laevigata RLG00000027649
rosa_multiflora Rmu_sc0013947.1_g000008
rosa_roxburghii Rroxscaffold_4G00294210
rosa_rugosa Rorug01G0297800
rosa_samantha Rh1AG307000 Rh1BG270400 Rh1CG287900 Rh1DG300600
rosa_wichuraiana Rw1G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 172
AclWI GGATC 4 cut(s) 174, 188, 201, 234
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 4 cut(s) 174, 188, 201, 234
AoxI GGCC 2 cut(s) 186, 313
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 19
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 246, 264
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 2 cut(s) 188, 315
BsnI GGCC 2 cut(s) 188, 315
Bsp143I GATC 3 cut(s) 166, 193, 226
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 188, 315
BspCNI CTCAG 2 cut(s) 247, 265
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 4 cut(s) 174, 188, 201, 234
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 166, 193, 226
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 255, 273
BstKTI GATC 3 cut(s) 169, 196, 229
BstMBI GATC 3 cut(s) 166, 193, 226
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 193, 226
BstYI RGATCY 2 cut(s) 193, 226
BsuRI GGCC 2 cut(s) 188, 315
BtsIMutI CAGTG 1 cut(s) 66
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 140, 305
CviJI RGCY 4 cut(s) 188, 207, 259, 315
CviKI_1 RGCY 4 cut(s) 188, 207, 259, 315
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 255, 273
DpnI GATC 3 cut(s) 168, 195, 228
DpnII GATC 3 cut(s) 166, 193, 226
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 143, 308
FaiI YATR 5 cut(s) 123, 141, 203, 222, 306
FatI CATG 2 cut(s) 139, 304
FauI CCCGC 1 cut(s) 165
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 2 cut(s) 188, 315
Hin1II CATG 2 cut(s) 143, 308
HincII GTYRAC 2 cut(s) 118, 213
HindII GTYRAC 2 cut(s) 118, 213
Hpy166II GTNNAC 3 cut(s) 118, 213, 283
Hpy8I GTNNAC 3 cut(s) 118, 213, 283
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 86, 128, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 255, 273
Hsp92II CATG 2 cut(s) 143, 308
Kzo9I GATC 3 cut(s) 166, 193, 226
LpnPI CCDG 3 cut(s) 96, 193, 267
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 3 cut(s) 168, 195, 228
MboI GATC 3 cut(s) 166, 193, 226
MboII GAAGA 2 cut(s) 83, 162
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 2 cut(s) 193, 226
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 3 cut(s) 19, 129, 198
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 1 cut(s) 217
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 172
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 166, 193, 226
NlaIII CATG 2 cut(s) 143, 308
NlaIV GGNNCC 1 cut(s) 195
PceI AGGCCT 1 cut(s) 315
PkrI GCNGC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 2 cut(s) 193, 226
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 166, 193, 226
SetI ASST 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 19, 129, 198
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 1 cut(s) 172
StuI AGGCCT 1 cut(s) 315
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 19, 129, 198
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.