FvH4_7g18580

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012853
Physical Location & Seq
Forward (+)
15474419 .. 15477177
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18580.t1

Sequence Viewer

Length: 309 bp
ATGGAGACGCGTACTGGAAATTCCCGTCCCAATAAAAAGCAATCGTCGGAGAAGTCTAAATCTGCCACTGAAGAGAAAAGGCCTGCAGAAAAGAAGCAAACACTTCTGTGTTTGTCAACTATGAAGAAAGTGGATAGGGGATCAGCGGCTGCAAAGAATGGCCAAGGATCCAATTATAAGGAAGTTAAATGTGAAAACTATATGCTGCATATTATAGCACCATTCTGGTCAACAGCCTATGAGGATCTACTCTCAACCAATGAGTGTTTTTCTGAGCCGATCCCCTTAACTAGACATGCGGCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

9.22

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54880
fragaria_vesca FvH4_7g18580 FvH4_7g18670
malus_domestica MD01G1102400.v1.1
prunus_persica Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1
pyrus_communis pycom01g12880
rosa_chinensis RchiOBHm_Chr1g0362401
rosa_laevigata RLG00000027649
rosa_multiflora Rmu_sc0013947.1_g000008
rosa_roxburghii Rroxscaffold_4G00294210
rosa_rugosa Rorug01G0297800
rosa_samantha Rh1AG307000 Rh1BG270400 Rh1CG287900 Rh1DG300600
rosa_wichuraiana Rw1G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccII CGCG 1 cut(s) 10
AciI CCGC 2 cut(s) 146, 299
AclWI GGATC 5 cut(s) 148, 162, 175, 252, 274
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 8
AleI CACNNNNGTG 1 cut(s) 106
AlwI GGATC 5 cut(s) 148, 162, 175, 252, 274
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 80, 160
ApeKI GCWGC 2 cut(s) 149, 205
ApoI RAATTY 1 cut(s) 19
BalI TGGCCA 1 cut(s) 162
BamHI GGATCC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 136, 192
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 147, 150, 206, 300
BlsI GCNGC 4 cut(s) 148, 151, 207, 301
BmiI GGNNCC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 136, 192
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 82, 162
BslFI GGGAC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 2 cut(s) 82, 162
Bsp143I GATC 4 cut(s) 140, 167, 244, 279
BspACI CCGC 2 cut(s) 146, 299
BspANI GGCC 2 cut(s) 82, 162
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 5 cut(s) 148, 162, 175, 252, 274
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 140, 167, 244, 279
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 4 cut(s) 143, 170, 247, 282
BstMBI GATC 4 cut(s) 140, 167, 244, 279
BstNSI RCATGY 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 136, 192
BstX2I RGATCY 2 cut(s) 167, 244
BstYI RGATCY 2 cut(s) 167, 244
BsuRI GGCC 2 cut(s) 82, 162
BtsIMutI CAGTG 2 cut(s) 66, 302
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 149
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 296
CviJI RGCY 5 cut(s) 82, 149, 162, 236, 277
CviKI_1 RGCY 5 cut(s) 82, 149, 162, 236, 277
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 273
DpnI GATC 4 cut(s) 142, 169, 246, 281
DpnII GATC 4 cut(s) 140, 167, 244, 279
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 299
FaiI YATR 8 cut(s) 122, 177, 201, 203, 210, 215, 240, 297
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 147, 150, 206, 300
Fsp4HI GCNGC 4 cut(s) 147, 150, 206, 300
FspBI CTAG 1 cut(s) 291
GluI GCNGC 4 cut(s) 147, 150, 206, 300
HaeIII GGCC 2 cut(s) 82, 162
HgaI GACGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 299
HincII GTYRAC 2 cut(s) 117, 231
HindII GTYRAC 2 cut(s) 117, 231
Hpy166II GTNNAC 2 cut(s) 117, 231
Hpy188I TCNGA 2 cut(s) 49, 274
Hpy8I GTNNAC 2 cut(s) 117, 231
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 86, 152, 208
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 4 cut(s) 140, 167, 244, 279
LpnPI CCDG 2 cut(s) 96, 211
Lsp1109I GCAGC 2 cut(s) 136, 192
MaeI CTAG 1 cut(s) 291
MalI GATC 4 cut(s) 142, 169, 246, 281
MboI GATC 4 cut(s) 140, 167, 244, 279
MboII GAAGA 2 cut(s) 83, 136
MflI RGATCY 2 cut(s) 167, 244
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 2 cut(s) 19, 172
MluI ACGCGT 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 1 cut(s) 235
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 186, 287
MslI CAYNNNNRTG 1 cut(s) 106
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 146
MvnI CGCG 1 cut(s) 10
NdeII GATC 4 cut(s) 140, 167, 244, 279
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 169
NspI RCATGY 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 106
PceI AGGCCT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 148, 151, 207, 301
PsiI TTATAA 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 167, 244
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 2 cut(s) 186, 287
SatI GCNGC 4 cut(s) 147, 150, 206, 300
Sau3AI GATC 4 cut(s) 140, 167, 244, 279
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 7 cut(s) 21, 27, 36, 95, 176, 238, 303
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 2 cut(s) 19, 172
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 2 cut(s) 146, 299
SspMI CTAG 1 cut(s) 291
StuI AGGCCT 1 cut(s) 82
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 306
TasI AATT 2 cut(s) 19, 172
TauI GCSGC 2 cut(s) 149, 302
Tru1I TTAA 2 cut(s) 186, 287
Tru9I TTAA 2 cut(s) 186, 287
TscAI CASTG 2 cut(s) 73, 309
TseI GCWGC 2 cut(s) 149, 205
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 73, 309
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 299
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.