Rh1DG300600

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012853
Physical Location & Seq
Forward (+)
52666614 .. 52670284
3671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG300600.1

Sequence Viewer

Length: 303 bp
ATGGAGACGCGTACTGGAAATTCCCGTTCCAATAAAAAGCAATCTTTAGAGAATAACAAATCTGCCACTGAAGAGAAAAGTCCTGCAGAAAATGAAGCAAACACTTCTGTATTTGTCAACTATGCTGCAATTGCTTGGCATGACAGCAGAAGAAAGTGGGTTGGGGATCAGCGGGTGCAAAGAATGGCCAAGGATCCAATTATAAGCTGGTCAACAGCGTATGAGGATCTACTTTCAACCAATGAGTGTTTCCCTGAGCCAATCCCTTTAACTGTAAGTTTGAAACAAGCACACATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

6.73

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54880
fragaria_vesca FvH4_7g18580 FvH4_7g18670
malus_domestica MD01G1102400.v1.1
prunus_persica Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1
pyrus_communis pycom01g12880
rosa_chinensis RchiOBHm_Chr1g0362401
rosa_laevigata RLG00000027649
rosa_multiflora Rmu_sc0013947.1_g000008
rosa_roxburghii Rroxscaffold_4G00294210
rosa_rugosa Rorug01G0297800
rosa_samantha Rh1AG307000 Rh1BG270400 Rh1CG287900 Rh1DG300600
rosa_wichuraiana Rw1G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 172
AclWI GGATC 4 cut(s) 174, 188, 201, 234
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 237, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 4 cut(s) 174, 188, 201, 234
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 19
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 188
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 166, 193, 226
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 4 cut(s) 174, 188, 201, 234
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 166, 193, 226
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 3 cut(s) 169, 196, 229
BstMBI GATC 3 cut(s) 166, 193, 226
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 193, 226
BstYI RGATCY 2 cut(s) 193, 226
BsuRI GGCC 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 66
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 188, 207, 259
CviKI_1 RGCY 3 cut(s) 188, 207, 259
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 168, 195, 228
DpnII GATC 3 cut(s) 166, 193, 226
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 123, 141, 203, 222, 299, 301
FatI CATG 1 cut(s) 139
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 143
HincII GTYRAC 2 cut(s) 118, 213
HindII GTYRAC 2 cut(s) 118, 213
Hpy166II GTNNAC 2 cut(s) 118, 213
Hpy8I GTNNAC 2 cut(s) 118, 213
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 86, 128, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 3 cut(s) 166, 193, 226
LpnPI CCDG 3 cut(s) 96, 193, 267
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 3 cut(s) 168, 195, 228
MboI GATC 3 cut(s) 166, 193, 226
MboII GAAGA 2 cut(s) 83, 162
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 2 cut(s) 193, 226
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 3 cut(s) 19, 129, 198
MluI ACGCGT 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 1 cut(s) 217
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 172
MunI CAATTG 1 cut(s) 129
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 166, 193, 226
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 2 cut(s) 193, 226
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 166, 193, 226
SetI ASST 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 19, 129, 198
SsiI CCGC 1 cut(s) 172
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 274
TasI AATT 3 cut(s) 19, 129, 198
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.