FvH4_7g18670

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012853
Physical Location & Seq
Forward (+)
15517966 .. 15519671
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18670.t1

Sequence Viewer

Length: 327 bp
ATGGAGACGCGTACTGGAAATTCCCGTCCCAATAAAAAGCAATCTTTGGAGAAGTCTAAATCTGCCACTGAAGAGAAAAGACCTGCAGAAAAAGAAGCAAACACTTCTGTGTTTGTCAACTATGCTGCAATTGCTTGGCATGAGAGTAGAAGAAAGTGGGTAGGGGATCAGCGGCTGCAAAGAATGGCCAAAGATCCAATTATAAGCTGGTCAACAGCCTATGAGGATCTACTTTCAACCAATGAGTGTTTTCCTGAGCCGATCCCCTTAACTGAGATGGTTGACTTTTTAGTTGATATTTGGCATGATGAAGGTCTGTTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

5.23

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 68 - 108 4.2e-10 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54880
fragaria_vesca FvH4_7g18580 FvH4_7g18670
malus_domestica MD01G1102400.v1.1
prunus_persica Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1 Prupe.2G208000_v2.0.a1
pyrus_communis pycom01g12880
rosa_chinensis RchiOBHm_Chr1g0362401
rosa_laevigata RLG00000027649
rosa_multiflora Rmu_sc0013947.1_g000008
rosa_roxburghii Rroxscaffold_4G00294210
rosa_rugosa Rorug01G0297800
rosa_samantha Rh1AG307000 Rh1BG270400 Rh1CG287900 Rh1DG300600
rosa_wichuraiana Rw1G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 91
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 172
AclWI GGATC 4 cut(s) 174, 188, 234, 256
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 4 cut(s) 174, 188, 234, 256
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 125, 175
ApoI RAATTY 1 cut(s) 19
BalI TGGCCA 1 cut(s) 188
BbvI GCAGC 2 cut(s) 112, 162
BccI CCATC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 3 cut(s) 126, 173, 176
BlsI GCNGC 3 cut(s) 127, 174, 177
Bpu10I CCTNAGC 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 246, 264
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 112, 162
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 166, 193, 226, 261
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 247, 265
BspFNI CGCG 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 4 cut(s) 174, 188, 234, 256
BsrI ACTGG 1 cut(s) 19
BssMI GATC 4 cut(s) 166, 193, 226, 261
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 255, 273
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 4 cut(s) 169, 196, 229, 264
BstMBI GATC 4 cut(s) 166, 193, 226, 261
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 112, 162
BstX2I RGATCY 2 cut(s) 193, 226
BstYI RGATCY 2 cut(s) 193, 226
BsuRI GGCC 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 175
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 140, 305
CviJI RGCY 5 cut(s) 175, 188, 207, 218, 259
CviKI_1 RGCY 5 cut(s) 175, 188, 207, 218, 259
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 255, 273
DpnI GATC 4 cut(s) 168, 195, 228, 263
DpnII GATC 4 cut(s) 166, 193, 226, 261
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 2 cut(s) 143, 308
FaiI YATR 5 cut(s) 123, 141, 203, 222, 306
FaqI GGGAC 1 cut(s) 12
FatI CATG 2 cut(s) 139, 304
Fnu4HI GCNGC 3 cut(s) 126, 173, 176
Fsp4HI GCNGC 3 cut(s) 126, 173, 176
GluI GCNGC 3 cut(s) 126, 173, 176
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 143, 308
HincII GTYRAC 3 cut(s) 118, 213, 283
HindII GTYRAC 3 cut(s) 118, 213, 283
Hpy166II GTNNAC 3 cut(s) 118, 213, 283
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 3 cut(s) 118, 213, 283
HpyAV CCTTC 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 86, 128, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 255, 273
Hsp92II CATG 2 cut(s) 143, 308
Kzo9I GATC 4 cut(s) 166, 193, 226, 261
LpnPI CCDG 3 cut(s) 96, 193, 267
Lsp1109I GCAGC 2 cut(s) 112, 162
MalI GATC 4 cut(s) 168, 195, 228, 263
MboI GATC 4 cut(s) 166, 193, 226, 261
MboII GAAGA 2 cut(s) 83, 162
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 2 cut(s) 193, 226
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 3 cut(s) 19, 129, 198
MluI ACGCGT 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 1 cut(s) 217
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 172
MunI CAATTG 1 cut(s) 129
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 4 cut(s) 166, 193, 226, 261
NlaIII CATG 2 cut(s) 143, 308
OliI CACNNNNGTG 1 cut(s) 107
PkrI GCNGC 3 cut(s) 127, 174, 177
PsiI TTATAA 1 cut(s) 203
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 175
PsuI RGATCY 2 cut(s) 193, 226
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 3 cut(s) 126, 173, 176
Sau3AI GATC 4 cut(s) 166, 193, 226, 261
SetI ASST 3 cut(s) 85, 209, 316
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 9 cut(s) 21, 27, 36, 95, 147, 152, 220, 266, 317
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 3 cut(s) 19, 129, 198
SsiI CCGC 1 cut(s) 172
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 19, 129, 198
TauI GCSGC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 125, 175
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.