Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

41340903 .. 41391127

Gene Structure 50225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0297800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGTTAGAGCAATCCCGGCCGCTCAATCCGGCCATGACCTTCGACGAGGTCTCCCTGGAGCGCAGCAAGAGCTTCGTCAAGGCCTTACAGGAGCTCAAGAACTTGAGGCCTCAGCTTTACTCTGCTGCGGAATATTGTGAAAAGTCGTATCTTCATAGCGAGCAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTGCGAGCCCTTGTTAATGCTGTTGATCACCTTGGCACTGTGGCCTACAAGTTAACTGACCTTCTTGACCAGCAAACCTTAGATGTTTCAACCATGGACCTGAAAGTTACTTGCCTAAACCAGAAACTTCTTACATGCAAAACATTCATGGATAAAGAAGGTTCGAGGCAGCAGCAGCTGTTGTCATTCTTCCCAAGACATCACAAGCACTACATTTTACCCAATTCTGTCAATAAGAAGGTACATTTCAGTCCACACGTACAGACTGATACTTGGCAACATGCTTATCAAGCAAGACCACATGTTCAACCGTCAAGTGCCACTGCAGCAAAAACTCTTTCCTGGCATTTAGCTTCAGAAACAAAATCAACCTTGAAGGGGGCTTCGCATGGTCTGGCTAGCTCTGCAGACACAAAAGTTTCTGTAAATACATCTGGCACTTTCCAGCTTTTAGATAATGAGGGGAGCGCCACTACGAAATCCTCGGGTGCTCACCTGCAGTTACCAAGTCGAGTTCCTGGTTCTGAACCATTTGTTGCTGGACATAGGGATGCGGTGGATGGTTACAGGCCACTAGGGGCGGCCAGGTCATTTGACAACCACAATCGACAGATCGTGCGAGTTCCTGTTCGCAGCAAAAGTCTGTTATCAGCTTTTTTTGTCAAACAGAAAAGCACAAAGCTGAAGACTGGGTCCGTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

302

Amino Acids

33.63

Weight (kDa)

9.5

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	708
AccBSI	CCGCTC	1 cut(s)	25
AciI	CCGC	4 cut(s)	23, 131, 758, 785
AcoI	YGGCCR	3 cut(s)	20, 33, 786
AcuI	CTGAAG	2 cut(s)	543, 908
AfaI	GTAC	3 cut(s)	180, 447, 465
AfiI	CCNNNNNNNGG	1 cut(s)	582
AflIII	ACRYGT	2 cut(s)	460, 505
AgsI	TTSAA	3 cut(s)	294, 512, 580
AjnI	CCWGG	4 cut(s)	57, 545, 721, 788
AluBI	AGCT	9 cut(s)	75, 97, 118, 382, 557, 606, 652, 857, 886
AluI	AGCT	9 cut(s)	75, 97, 118, 382, 557, 606, 652, 857, 886
Alw21I	GWGCWC	2 cut(s)	99, 697
Alw26I	GTCTC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	688
AoxI	GGCC	7 cut(s)	20, 33, 84, 110, 246, 773, 786
ApeKI	GCWGC	7 cut(s)	66, 128, 373, 376, 379, 530, 837
AspLEI	GCGC	2 cut(s)	66, 674
AspS9I	GGNCC	2 cut(s)	301, 897
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	224, 689
AsuNHI	GCTAGC	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	688
AvaII	GGWCC	2 cut(s)	301, 897
BanII	GRGCYC	2 cut(s)	99, 214
BbsI	GAAGAC	1 cut(s)	896
Bbv12I	GWGCWC	2 cut(s)	99, 697
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	7 cut(s)	78, 115, 385, 388, 391, 542, 849
BccI	CCATC	1 cut(s)	758
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	4 cut(s)	59, 547, 723, 790
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	603, 779
BfmI	CTRYAG	3 cut(s)	528, 609, 701
BfoI	RGCGCY	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	708
BisI	GCNGC	9 cut(s)	23, 67, 129, 374, 377, 380, 531, 786, 838
BlsI	GCNGC	9 cut(s)	24, 68, 130, 375, 378, 381, 532, 787, 839
Bme1390I	CCNGG	5 cut(s)	19, 59, 547, 723, 790
Bme18I	GGWCC	2 cut(s)	301, 897
BmeT110I	CYCGRG	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	301, 897
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	5 cut(s)	19, 59, 547, 723, 790
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	1 cut(s)	745
BmtI	GCTAGC	1 cut(s)	606
BmuI	ACTGGG	1 cut(s)	903
BpiI	GAAGAC	1 cut(s)	896
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	83, 127
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	57, 235, 297, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse1I	ACTGG	2 cut(s)	186, 898
BseBI	CCWGG	4 cut(s)	59, 547, 723, 790
BseDI	CCNNGG	4 cut(s)	57, 235, 297, 687
BseGI	GGATG	2 cut(s)	760, 769
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	186, 898
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	7 cut(s)	78, 115, 385, 388, 391, 542, 849
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	7 cut(s)	22, 35, 86, 112, 248, 775, 788
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	99, 697
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	2 cut(s)	19, 32
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	7 cut(s)	22, 35, 86, 112, 248, 775, 788
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	688
Bsp1286I	GDGCHC	3 cut(s)	99, 214, 697
Bsp143I	GATC	2 cut(s)	229, 816
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	4 cut(s)	23, 131, 758, 785
BspANI	GGCC	7 cut(s)	22, 35, 86, 112, 248, 775, 788
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	898
BspMAI	CTGCAG	3 cut(s)	532, 613, 705
BspMI	ACCTGC	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	606
BspTNI	GGTCTC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	186, 898
BssECI	CCNNGG	4 cut(s)	57, 235, 297, 687
BssMI	GATC	2 cut(s)	229, 816
BssT1I	CCWWGG	2 cut(s)	235, 297
Bst2UI	CCWGG	4 cut(s)	59, 547, 723, 790
Bst4CI	ACNGT	2 cut(s)	244, 516
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	164, 210, 604
BstDEI	CTNAG	2 cut(s)	114, 283
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	760, 769
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	2 cut(s)	66, 674
BstKTI	GATC	2 cut(s)	232, 819
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	2 cut(s)	229, 816
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 72, 209, 379, 494, 530, 608
BstNI	CCWGG	4 cut(s)	59, 547, 723, 790
BstNSI	RCATGY	3 cut(s)	342, 488, 509
BstSCI	CCNGG	5 cut(s)	17, 57, 545, 721, 788
BstSFI	CTRYAG	3 cut(s)	528, 609, 701
BstV1I	GCAGC	7 cut(s)	78, 115, 385, 388, 391, 542, 849
BstV2I	GAAGAC	1 cut(s)	896
BstZI	CGGCCG	1 cut(s)	20
BsuRI	GGCC	7 cut(s)	22, 35, 86, 112, 248, 775, 788
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	760, 769
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	240, 525
BveI	ACCTGC	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	164, 210, 604
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	2 cut(s)	66, 674
Cfr13I	GGNCC	2 cut(s)	301, 897
Csp6I	GTAC	3 cut(s)	179, 446, 464
CviAII	CATG	7 cut(s)	37, 298, 339, 352, 485, 506, 593
CviQI	GTAC	3 cut(s)	179, 446, 464
DdeI	CTNAG	2 cut(s)	114, 283
DpnI	GATC	2 cut(s)	231, 818
DpnII	GATC	2 cut(s)	229, 816
EaeI	YGGCCR	3 cut(s)	20, 33, 786
EagI	CGGCCG	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	235, 297
Eco147I	AGGCCT	2 cut(s)	86, 112
Eco24I	GRGCYC	2 cut(s)	99, 214
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	301, 897
Eco52I	CGGCCG	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	543, 908
Eco88I	CYCGRG	1 cut(s)	688
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	4 cut(s)	57, 545, 721, 788
EcoT14I	CCWWGG	2 cut(s)	235, 297
EcoT38I	GRGCYC	2 cut(s)	99, 214
ErhI	CCWWGG	2 cut(s)	235, 297
FaeI	CATG	7 cut(s)	40, 301, 342, 355, 488, 509, 596
FatI	CATG	7 cut(s)	36, 297, 338, 351, 484, 505, 592
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	9 cut(s)	23, 67, 129, 374, 377, 380, 531, 786, 838
FokI	GGATG	2 cut(s)	767, 776
FriOI	GRGCYC	2 cut(s)	99, 214
Fsp4HI	GCNGC	9 cut(s)	23, 67, 129, 374, 377, 380, 531, 786, 838
FspBI	CTAG	2 cut(s)	603, 779
GlaI	GCGC	2 cut(s)	65, 673
GluI	GCNGC	9 cut(s)	23, 67, 129, 374, 377, 380, 531, 786, 838
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	7 cut(s)	22, 35, 86, 112, 248, 775, 788
HapII	CCGG	2 cut(s)	19, 32
HhaI	GCGC	2 cut(s)	66, 674
Hin1II	CATG	7 cut(s)	40, 301, 342, 355, 488, 509, 596
Hin6I	GCGC	2 cut(s)	64, 672
HinP1I	GCGC	2 cut(s)	64, 672
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	19, 32
HphI	GGTGA	2 cut(s)	224, 689
Hpy166II	GTNNAC	2 cut(s)	258, 458
Hpy188I	TCNGA	2 cut(s)	562, 730
Hpy188III	TCNNGA	3 cut(s)	100, 269, 906
Hpy8I	GTNNAC	2 cut(s)	258, 458
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	5 cut(s)	52, 275, 356, 436, 574
HpyCH4III	ACNGT	2 cut(s)	244, 516
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	342, 530, 611, 703
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 72, 209, 379, 494, 530, 608
HpyF3I	CTNAG	2 cut(s)	114, 283
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	40, 301, 342, 355, 488, 509, 596
HspAI	GCGC	2 cut(s)	64, 672
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	229, 816
LmnI	GCTCC	3 cut(s)	61, 94, 669
Lsp1109I	GCAGC	7 cut(s)	78, 115, 385, 388, 391, 542, 849
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	2 cut(s)	603, 779
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	310, 705, 767
MalI	GATC	2 cut(s)	231, 818
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	229, 816
MboII	GAAGA	3 cut(s)	146, 385, 901
MhlI	GDGCHC	3 cut(s)	99, 214, 697
MluCI	AATT	1 cut(s)	427
MnlI	CCTC	6 cut(s)	43, 102, 123, 363, 658, 697
MseI	TTAA	2 cut(s)	219, 257
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	19, 32
MspR9I	CCNGG	5 cut(s)	19, 59, 547, 723, 790
MvaI	CCWGG	4 cut(s)	59, 547, 723, 790
MwoI	GCNNNNNNNGC	7 cut(s)	19, 72, 209, 379, 494, 530, 608
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	229, 816
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	7 cut(s)	40, 301, 342, 355, 488, 509, 596
NlaIV	GGNNCC	1 cut(s)	898
NspI	RCATGY	3 cut(s)	342, 488, 509
PaqCI	CACCTGC	1 cut(s)	708
PceI	AGGCCT	2 cut(s)	86, 112
PciI	ACATGT	1 cut(s)	505
PflFI	GACNNNGTC	2 cut(s)	50, 895
PkrI	GCNGC	9 cut(s)	24, 68, 130, 375, 378, 381, 532, 787, 839
Ppu21I	YACGTR	1 cut(s)	463
PscI	ACATGT	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	4 cut(s)	57, 545, 721, 788
PspGI	CCWGG	4 cut(s)	57, 545, 721, 788
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	2 cut(s)	301, 897
PstI	CTGCAG	3 cut(s)	532, 613, 705
PstNI	CAGNNNCTG	1 cut(s)	382
PsyI	GACNNNGTC	2 cut(s)	50, 895
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	180, 447, 465
RsaNI	GTAC	3 cut(s)	179, 446, 464
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	219, 257
SatI	GCNGC	9 cut(s)	23, 67, 129, 374, 377, 380, 531, 786, 838
Sau3AI	GATC	2 cut(s)	229, 816
Sau96I	GGNCC	2 cut(s)	301, 897
ScrFI	CCNGG	5 cut(s)	19, 59, 547, 723, 790
SduI	GDGCHC	3 cut(s)	99, 214, 697
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	3 cut(s)	528, 609, 701
SinI	GGWCC	2 cut(s)	301, 897
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	98, 106
SmoI	CTYRAG	2 cut(s)	98, 106
Sse9I	AATT	1 cut(s)	427
SseBI	AGGCCT	2 cut(s)	86, 112
SsiI	CCGC	4 cut(s)	23, 131, 758, 785
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	2 cut(s)	603, 779
SstI	GAGCTC	1 cut(s)	99
StuI	AGGCCT	2 cut(s)	86, 112
StyD4I	CCNGG	5 cut(s)	17, 57, 545, 721, 788
StyI	CCWWGG	2 cut(s)	235, 297
TaaI	ACNGT	2 cut(s)	244, 516
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	45, 368, 715, 811
TasI	AATT	1 cut(s)	427
TauI	GCSGC	2 cut(s)	25, 788
Tru1I	TTAA	2 cut(s)	219, 257
Tru9I	TTAA	2 cut(s)	219, 257
TscAI	CASTG	2 cut(s)	247, 532
TseI	GCWGC	7 cut(s)	66, 128, 373, 376, 379, 530, 837
TspDTI	ATGAA	2 cut(s)	146, 340
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	2 cut(s)	247, 532
Tth111I	GACNNNGTC	2 cut(s)	50, 895
VpaK11BI	GGWCC	2 cut(s)	301, 897
XceI	RCATGY	3 cut(s)	342, 488, 509
XspI	CTAG	2 cut(s)	603, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.