Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013178.1

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

25804 .. 26310

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013178.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgagatcatgggtgaagccacaaacgtcgtcaactaatatcattggaaatttcttttggtgggcaacaacagtcgcggactcatctaagctaggagaagatcatgagttatgtgatttggtgcacctgattaatgaatctctcaaaggatttgataggggttattttgagtctcatcagggagaagagggatttggagccatttcaaactactttagtcaactagaagtcttgctttcttcaaaatccccaccagaagtttatttattcaccaattggacaagcattttttgcaaattggattttggatgggggaagcctttctggataggggtcatggggaaagtcaggcctgagtttcggaatttcacggtgttcatggaagcacaatgtggtaaaggaattgaagcgtgggtgaccttggaggcaaagcaaatggctctactcgaaaaagaccttaagcttctagcatttacttctccaaattctgggatttcaagcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

168

Amino Acids

19.04

Weight (kDa)

5.38

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	3 cut(s)	49, 364, 484
AdeI	CACNNNGTG	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	207, 243, 407, 498
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 177, 209
AluBI	AGCT	2 cut(s)	91, 463
AluI	AGCT	2 cut(s)	91, 463
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	49, 364, 484
AseI	ATTAAT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	25, 262, 427
BaeGI	GKGCMC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	3 cut(s)	92, 224, 467
BfrI	CTTAAG	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	5, 100
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	2 cut(s)	5, 100
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	73, 373
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	87, 354
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	8, 103
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	5, 100
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	103
CviAII	CATG	5 cut(s)	9, 104, 337, 379, 502
CviJI	RGCY	7 cut(s)	19, 91, 200, 319, 352, 440, 463
CviKI_1	RGCY	7 cut(s)	19, 91, 200, 319, 352, 440, 463
DdeI	CTNAG	2 cut(s)	87, 354
DpnI	GATC	2 cut(s)	7, 102
DpnII	GATC	2 cut(s)	5, 100
DraIII	CACNNNGTG	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	415
EcoO65I	GGTNACC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	5 cut(s)	12, 107, 340, 382, 505
FaiI	YATR	6 cut(s)	10, 105, 112, 338, 380, 503
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	5 cut(s)	8, 103, 336, 378, 501
FokI	GGATG	1 cut(s)	321
FspBI	CTAG	3 cut(s)	92, 224, 467
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	12, 107, 340, 382, 505
HincII	GTYRAC	2 cut(s)	33, 221
HindII	GTYRAC	2 cut(s)	33, 221
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	80, 137, 170
HphI	GGTGA	3 cut(s)	25, 262, 427
Hpy166II	GTNNAC	3 cut(s)	33, 124, 221
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	104, 325
Hpy8I	GTNNAC	3 cut(s)	33, 124, 221
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	73, 373
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	124, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	87, 354
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	5 cut(s)	12, 107, 340, 382, 505
Kzo9I	GATC	2 cut(s)	5, 100
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	140, 164, 267, 310, 334, 366, 474
MaeI	CTAG	3 cut(s)	92, 224, 467
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	7, 102
MboI	GATC	2 cut(s)	5, 100
MboII	GAAGA	3 cut(s)	110, 197, 231
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	6 cut(s)	49, 274, 296, 364, 402, 484
MlyI	GAGTC	2 cut(s)	74, 179
MnlI	CCTC	2 cut(s)	181, 418
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	132, 459
MspCI	CTTAAG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	291
NdeII	GATC	2 cut(s)	5, 100
NlaIII	CATG	5 cut(s)	12, 107, 340, 382, 505
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	488
PleI	GAGTC	2 cut(s)	74, 178
PpsI	GAGTC	2 cut(s)	74, 178
PshBI	ATTAAT	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	132, 459
Sau3AI	GATC	2 cut(s)	5, 100
SchI	GAGTC	2 cut(s)	74, 179
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	6 cut(s)	29, 93, 129, 422, 459, 465
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	6 cut(s)	49, 274, 296, 364, 402, 484
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	3 cut(s)	92, 224, 467
StuI	AGGCCT	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	73, 373
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	447
TasI	AATT	6 cut(s)	49, 274, 296, 364, 402, 484
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	132, 459
Tru9I	TTAA	2 cut(s)	132, 459
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	150, 367
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	458
VneI	GTGCAC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	3 cut(s)	49, 364, 484
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	3 cut(s)	92, 224, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.