Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8190972.1

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 698

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8190972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

accatcttcttcttcacttcagcatctaaaacctcacaaactttccctcttcgaccagctcactcccgcaacttacgccccttttgtcttgttccccaactcatcattaactaccaatctttcccagaccttagtccacttgaagacttctctatgcgagaccctcactctctactacccattttccggccgcaccaagaacaacctctacatttatgatttcgacgcgggtgtcccatacctcgaagcccgagtcaattgtcgcctgcctgagtttcttaagcttcaagaaacccagctgctaaacgacctccttccagttcttccattccggaaggaaacggatcactcagatctgcttcccttgcttgcttgtcaaatcaatgttttcgcttgcggtggattggcaatctctgtctccgtgtctcacaagattttcgatggggatacgggagacgcttttctcaaaacttgggcttctatttttcgcggggctcgcgacgacatcgtacaccctaatctctcccaagcctccctgtccttcccaccaagagatccattgcctcagaactatctggatttaatggatagcttgtggtttaagggaagcaattatgtttcaaagagatttgtgtttgatgccaaatccatagccacactgcgagcaagatcgacgagcgaaaacgttcccaagccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

232

Amino Acids

26.01

Weight (kDa)

8.1

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	231
AccII	CGCG	3 cut(s)	228, 490, 499
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	5 cut(s)	67, 191, 228, 397, 490
AclI	AACGTT	1 cut(s)	685
AclWI	GGATC	2 cut(s)	352, 549
AcoI	YGGCCR	1 cut(s)	188
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	143, 288, 622
AluBI	AGCT	4 cut(s)	59, 284, 299, 592
AluI	AGCT	4 cut(s)	59, 284, 299, 592
Alw26I	GTCTC	4 cut(s)	153, 422, 430, 448
AlwI	GGATC	2 cut(s)	352, 549
Ama87I	CYCGRG	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
Asp700I	GAANNNNTTC	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	11, 435
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	4 cut(s)	153, 422, 430, 448
BfrI	CTTAAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	191, 300
BlsI	GCNGC	2 cut(s)	192, 301
BmeT110I	CYCGRG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	32, 629
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	262, 364, 579
BseNI	ACTGG	1 cut(s)	318
BseX3I	CGGCCG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	3 cut(s)	228, 490, 499
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	187, 332
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	4 cut(s)	153, 422, 430, 448
BsmBI	CGTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	344, 353, 554, 669
Bsp68I	TCGCGA	1 cut(s)	499
BspACI	CCGC	5 cut(s)	67, 191, 228, 397, 490
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	263, 363, 578
BspEI	TCCGGA	1 cut(s)	331
BspFNI	CGCG	3 cut(s)	228, 490, 499
BspPI	GGATC	2 cut(s)	352, 549
BspTI	CTTAAG	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	4 cut(s)	344, 353, 554, 669
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	279
BstC8I	GCNNGC	5 cut(s)	267, 370, 395, 497, 664
BstDEI	CTNAG	4 cut(s)	131, 271, 350, 565
BstFNI	CGCG	3 cut(s)	228, 490, 499
BstKTI	GATC	4 cut(s)	347, 356, 557, 672
BstMAI	GTCTC	4 cut(s)	153, 422, 430, 448
BstMBI	GATC	4 cut(s)	344, 353, 554, 669
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 365, 496
BstPAI	GACNNNNGTC	1 cut(s)	132
BstUI	CGCG	3 cut(s)	228, 490, 499
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	353, 554
BstYI	RGATCY	2 cut(s)	353, 554
BstZI	CGGCCG	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
BtuMI	TCGCGA	1 cut(s)	499
Cac8I	GCNNGC	5 cut(s)	267, 370, 395, 497, 664
CseI	GACGC	2 cut(s)	234, 465
Csp6I	GTAC	1 cut(s)	510
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	4 cut(s)	131, 271, 350, 565
DpnI	GATC	4 cut(s)	346, 355, 556, 671
DpnII	GATC	4 cut(s)	344, 353, 554, 669
DrdI	GACNNNNNNGTC	1 cut(s)	231
DseDI	GACNNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	188
EagI	CGGCCG	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	448
FaiI	YATR	5 cut(s)	155, 217, 239, 616, 651
FaqI	GGGAC	1 cut(s)	219
FauI	CCCGC	3 cut(s)	74, 221, 483
Fnu4HI	GCNGC	2 cut(s)	191, 300
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	2 cut(s)	191, 300
GluI	GCNGC	2 cut(s)	191, 300
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	187, 332
HgaI	GACGC	2 cut(s)	234, 465
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	187, 332
Hpy166II	GTNNAC	2 cut(s)	137, 512
Hpy188I	TCNGA	2 cut(s)	353, 568
Hpy188III	TCNNGA	4 cut(s)	288, 332, 498, 576
Hpy8I	GTNNAC	2 cut(s)	137, 512
Hpy99I	CGWCG	3 cut(s)	228, 504, 677
HpyAV	CCTTC	3 cut(s)	324, 329, 551
HpyCH4IV	ACGT	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 365, 496
HpyF3I	CTNAG	4 cut(s)	131, 271, 350, 565
HpySE526I	ACGT	1 cut(s)	685
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	344, 353, 554, 669
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	32, 629
MaeII	ACGT	1 cut(s)	685
MalI	GATC	4 cut(s)	346, 355, 556, 671
MboI	GATC	4 cut(s)	344, 353, 554, 669
MboII	GAAGA	4 cut(s)	4, 41, 155, 315
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	2 cut(s)	353, 554
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	2 cut(s)	257, 611
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	8 cut(s)	43, 57, 174, 216, 252, 321, 542, 574
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	4 cut(s)	108, 280, 582, 601
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	279
MspI	CCGG	2 cut(s)	187, 332
MunI	CAATTG	1 cut(s)	257
MvnI	CGCG	3 cut(s)	228, 490, 499
MwoI	GCNNNNNNNGC	3 cut(s)	75, 365, 496
NdeII	GATC	4 cut(s)	344, 353, 554, 669
NruI	TCGCGA	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	192, 301
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	295
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PsuI	RGATCY	2 cut(s)	353, 554
PvuII	CAGCTG	1 cut(s)	299
RruI	TCGCGA	1 cut(s)	499
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SaqAI	TTAA	4 cut(s)	108, 280, 582, 601
SatI	GCNGC	2 cut(s)	191, 300
Sau3AI	GATC	4 cut(s)	344, 353, 554, 669
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	2 cut(s)	32, 629
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	257, 611
SsiI	CCGC	5 cut(s)	67, 191, 228, 397, 490
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	5 cut(s)	52, 223, 244, 439, 672
TasI	AATT	2 cut(s)	257, 611
TauI	GCSGC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	108, 280, 582, 601
Tru9I	TTAA	4 cut(s)	108, 280, 582, 601
TscAI	CASTG	1 cut(s)	664
TseI	GCWGC	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	357, 410
TspRI	CASTG	1 cut(s)	664
Vha464I	CTTAAG	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.