Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

46878442 .. 46879007

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTTCTTCTCAGGTTCTGTTACCAGGTTCCTCACCAAGAACTTCCATAGTAGCGCATGCAATGAACATGAGATCACGGATGAAGCCACAAACGTCGTCAGCTAATATCATAGGAAATTTCTTTTGGTGGGTGGCAACAGTCGCCGACTCATCTAAGCTAGCAGAAGATCATGAGTTATGTGACTTGGTTCACCTGATTAATGAATCTCACAAAGGATTTGATAGGGGTTATTTTGAGTCTCATCAGGGAGAAGAGGGATTTGGAGCCATTGGAAACTTCTTTTATCAACTAGAAGTCTTGCTTTCTTCAAAACCTCCACCAGAACTTTATTTATTCACCAATTGGACAAGCATTTTTCACAAATTGGATTTTGGTGGGGGAAGCCTTTCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

5.8

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	4 cut(s)	109, 141, 246, 278
AluBI	AGCT	2 cut(s)	104, 160
AluI	AGCT	2 cut(s)	104, 160
Alw26I	GTCTC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	27, 185, 331
AsuNHI	GCTAGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	161, 293
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	31, 268
BmrFI	CCNGG	1 cut(s)	27
BmtI	GCTAGC	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	74, 169
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	31, 268
BspOI	GCTAGC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	69
BssMI	GATC	2 cut(s)	74, 169
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	60, 162
BstDEI	CTNAG	2 cut(s)	12, 156
BstF5I	GGATG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	77, 172
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	74, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	60, 162
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	25
CviAII	CATG	3 cut(s)	59, 70, 173
CviJI	RGCY	6 cut(s)	5, 88, 104, 160, 269, 387
CviKI_1	RGCY	6 cut(s)	5, 88, 104, 160, 269, 387
DdeI	CTNAG	2 cut(s)	12, 156
DpnI	GATC	2 cut(s)	76, 171
DpnII	GATC	2 cut(s)	74, 169
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	62, 73, 176
FaiI	YATR	6 cut(s)	50, 60, 71, 113, 174, 181
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	3 cut(s)	58, 69, 172
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	2 cut(s)	161, 293
GlaI	GCGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	62, 73, 176
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	3 cut(s)	149, 206, 239
HphI	GGTGA	3 cut(s)	27, 185, 331
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	12, 156
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	62, 73, 176
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	74, 169
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	12, 39, 209, 233, 336, 378
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	2 cut(s)	161, 293
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	21, 182
MalI	GATC	2 cut(s)	76, 171
MboI	GATC	2 cut(s)	74, 169
MboII	GAAGA	3 cut(s)	179, 266, 300
MfeI	CAATTG	1 cut(s)	343
MluCI	AATT	3 cut(s)	118, 343, 365
MlyI	GAGTC	2 cut(s)	143, 248
MnlI	CCTC	3 cut(s)	43, 250, 327
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	2 cut(s)	74, 169
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	62, 73, 176
NlaIV	GGNNCC	2 cut(s)	31, 268
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	143, 247
PpsI	GAGTC	2 cut(s)	143, 247
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	31, 268
PstNI	CAGNNNCTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	74, 169
SchI	GAGTC	2 cut(s)	143, 248
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	7 cut(s)	18, 31, 98, 106, 162, 198, 319
SexAI	ACCWGGT	1 cut(s)	25
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	118, 343, 365
SspMI	CTAG	2 cut(s)	161, 293
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	98
TasI	AATT	3 cut(s)	118, 343, 365
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	80, 98, 219
TspGWI	ACGGA	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	161, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.