Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Reverse (-)

25822438 .. 25822995

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGATCAGTATCATTTCCAGAGGCACCATCAAACCATCGCTCGATTCCTCTTCACTTAACCATCTAAGTCCTTTCAAACTTTCCCTCATCGACCAGCTGACTCCCGCAACTTATATGCCACTGATCTTGTTCTACCCCATTAGTGATCCCAAGTCATCATTCAATCTCCTCGAAACCCTAACCCGCTTAAAAAGCTCCCTCTCCGAGACTCTCACTCTCTACTATCCATTTTTGGGACGGGCTAAAAACAACCTCGACATTCATGACTTTGACACTGGTATTCCCTTCCTTGAAGCCCGAGTCAATTGTCGCATGCTCGAGTTTCTTAAGCTCCAAGAAACTGAGTTGCTGAACCTTTTCGTTCCATTCCATCCCATTTGCAAGGAAACTGGTGATGAGTCTCTGCTCCCCATGATAGCTTTTCAAGTGAATATCTTTGCTTGTGGTGGAATAGCAATTGGGGGATCCGCTTCTCACAAGCTTTGTGATGGGTTGGCCGCGAACTCTATCCTTGAGTCTTGGTCTGCTATTTTTCGTGGGAGTGCGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

186

Amino Acids

20.46

Weight (kDa)

5.78

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 182	3.1e-34	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	1 cut(s)	503
AciI	CCGC	4 cut(s)	108, 187, 471, 501
AclWI	GGATC	3 cut(s)	143, 462, 475
AcoI	YGGCCR	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	79, 166, 296, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	5 cut(s)	100, 198, 334, 422, 484
AluI	AGCT	5 cut(s)	100, 198, 334, 422, 484
Alw26I	GTCTC	2 cut(s)	203, 408
AlwI	GGATC	3 cut(s)	143, 462, 475
Ama87I	CYCGRG	2 cut(s)	300, 320
AoxI	GGCC	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	2 cut(s)	300, 320
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	26
BccI	CCATC	5 cut(s)	38, 46, 72, 381, 485
BcoDI	GTCTC	2 cut(s)	203, 408
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
BmeT110I	CYCGRG	2 cut(s)	300, 320
BmiI	GGNNCC	2 cut(s)	28, 469
BpuEI	CTTGAG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	283, 397
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	283, 397
BseRI	GAGGAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	26
BsiHKCI	CYCGRG	2 cut(s)	300, 320
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	203, 408
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	500
BsoBI	CYCGRG	2 cut(s)	300, 320
Bsp143I	GATC	4 cut(s)	6, 126, 148, 467
BspACI	CCGC	4 cut(s)	108, 187, 471, 501
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	28, 469
BspPI	GGATC	3 cut(s)	143, 462, 475
BspT107I	GGYRCC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	283, 397
BssMI	GATC	4 cut(s)	6, 126, 148, 467
Bst6I	CTCTTC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	68, 345
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	503
BstKTI	GATC	4 cut(s)	9, 129, 151, 470
BstMAI	GTCTC	2 cut(s)	203, 408
BstMBI	GATC	4 cut(s)	6, 126, 148, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	319
BstUI	CGCG	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	500
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	122, 276
Cac8I	GCNNGC	1 cut(s)	317
CciI	TCATGA	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	3 cut(s)	266, 316, 415
CviJI	RGCY	8 cut(s)	100, 198, 245, 299, 334, 422, 484, 500
CviKI_1	RGCY	8 cut(s)	100, 198, 245, 299, 334, 422, 484, 500
DdeI	CTNAG	2 cut(s)	68, 345
DpnI	GATC	4 cut(s)	8, 128, 150, 469
DpnII	GATC	4 cut(s)	6, 126, 148, 467
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	300, 320
FaeI	CATG	3 cut(s)	269, 319, 418
FaiI	YATR	5 cut(s)	117, 119, 267, 317, 416
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	3 cut(s)	265, 315, 414
FauI	CCCGC	2 cut(s)	115, 194
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	500
Hin1II	CATG	3 cut(s)	269, 319, 418
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	6 cut(s)	47, 103, 211, 303, 401, 518
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	21, 266
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	68, 345
Hsp92II	CATG	3 cut(s)	269, 319, 418
Kzo9I	GATC	4 cut(s)	6, 126, 148, 467
LmnI	GCTCC	3 cut(s)	203, 339, 414
LpnPI	CCDG	4 cut(s)	34, 110, 264, 378
MalI	GATC	4 cut(s)	8, 128, 150, 469
MboI	GATC	4 cut(s)	6, 126, 148, 467
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	2 cut(s)	307, 459
MflI	RGATCY	1 cut(s)	467
MluCI	AATT	2 cut(s)	307, 459
MlyI	GAGTC	5 cut(s)	97, 205, 312, 410, 527
MnlI	CCTC	6 cut(s)	17, 61, 98, 182, 212, 266
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	3 cut(s)	60, 191, 330
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	307, 459
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	4 cut(s)	6, 126, 148, 467
NlaIII	CATG	3 cut(s)	269, 319, 418
NlaIV	GGNNCC	2 cut(s)	28, 469
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	320
PagI	TCATGA	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	5 cut(s)	97, 205, 311, 409, 526
PpsI	GAGTC	5 cut(s)	97, 205, 311, 409, 526
PspN4I	GGNNCC	2 cut(s)	28, 469
PspXI	VCTCGAGB	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	60, 191, 330
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	4 cut(s)	6, 126, 148, 467
SchI	GAGTC	5 cut(s)	97, 205, 312, 410, 527
SetI	ASST	7 cut(s)	102, 200, 258, 336, 360, 424, 486
Sfr274I	CTCGAG	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	320, 329, 515
SmoI	CTYRAG	3 cut(s)	320, 329, 515
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	307, 459
SsiI	CCGC	4 cut(s)	108, 187, 471, 501
TaqI	TCGA	5 cut(s)	45, 93, 174, 258, 321
TasI	AATT	2 cut(s)	307, 459
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	60, 191, 330
Tru9I	TTAA	3 cut(s)	60, 191, 330
TscAI	CASTG	2 cut(s)	129, 283
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	129, 283
Vha464I	CTTAAG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.