Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

53997896 .. 54000099

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTTCTTCTCGGGCACTATCACCAGGTACTTCACCAAGAACTTCCATAGTAGCGCAAGCACTGAACATGAGATCACGGGTGAAGCCACAAACGTCGTCAACTAATATCATTGGAAATTTCTTTTGGTGGACGAAAACAGTCGCGGACTCATCTAAGCTAGGAGAAGATCATGAGTTATGTGACTTGGTGCACCTGATTAATGAATCTCTCAAAGGATTTGATAGGGGTTATTTTGAGTCTCATCAGGGAGAAGAGGGATTTGAAGCCATTTCAAACTACTTTATTTATTCACCGGTTGGACAAGCATTTTTCACAAATTGGATTTTGGATGGAGGAAGCCTTTCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

117

Amino Acids

12.91

Weight (kDa)

5.49

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	31
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	266, 276
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	4 cut(s)	15, 27, 94, 285
AvaI	CYCGRG	1 cut(s)	12
BaeGI	GKGCMC	2 cut(s)	19, 195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	337
BseSI	GKGCMC	2 cut(s)	19, 195
Bsh1236I	CGCG	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	19, 195
Bsp143I	GATC	2 cut(s)	74, 169
BspACI	CCGC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssMI	GATC	2 cut(s)	74, 169
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	77, 172
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	74, 169
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSLI	GKGCMC	2 cut(s)	19, 195
BstUI	CGCG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	295
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	30
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	2 cut(s)	70, 173
CviJI	RGCY	5 cut(s)	5, 88, 160, 269, 342
CviKI_1	RGCY	5 cut(s)	5, 88, 160, 269, 342
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	76, 171
DpnII	GATC	2 cut(s)	74, 169
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	73, 176
FaiI	YATR	4 cut(s)	50, 71, 174, 181
FatI	CATG	2 cut(s)	69, 172
FokI	GGATG	1 cut(s)	344
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	73, 176
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	3 cut(s)	149, 206, 239
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	4 cut(s)	15, 27, 94, 285
Hpy166II	GTNNAC	3 cut(s)	102, 132, 193
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	102, 132, 193
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	73, 176
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	74, 169
LpnPI	CCDG	6 cut(s)	12, 39, 209, 233, 309, 333
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	76, 171
MboI	GATC	2 cut(s)	74, 169
MboII	GAAGA	2 cut(s)	179, 266
MhlI	GDGCHC	2 cut(s)	19, 195
MluCI	AATT	2 cut(s)	118, 319
MlyI	GAGTC	2 cut(s)	143, 248
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	2 cut(s)	250, 329
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	146
NdeII	GATC	2 cut(s)	74, 169
NlaIII	CATG	2 cut(s)	73, 176
NmuCI	GTSAC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	295
PleI	GAGTC	2 cut(s)	143, 247
PpsI	GAGTC	2 cut(s)	143, 247
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	74, 169
SchI	GAGTC	2 cut(s)	143, 248
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	19, 195
SetI	ASST	4 cut(s)	31, 98, 162, 198
SexAI	ACCWGGT	1 cut(s)	25
Sse9I	AATT	2 cut(s)	118, 319
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	98
TasI	AATT	2 cut(s)	118, 319
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.