Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

46877642 .. 46878109

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTGAACACCATGGAGATCAGTATCATTTCCAGAGACACCATCAAACCATCGCTCGATTCCTCTTCACTTAACCATTTAAGTCCTTTCAAACTTTCCCTCATCGACCAGCTGACTCCCGCAACTTATATGCCACTGATCTTGTTCTACCCCATTAGTGATCCCAAGTCATCGTTCAATCTCCTCGAAACCCTAACCCGCTTAAAAAGCTCCCTCTCCGAGACTCTCACTCTCTACTATCCATTTTCGGGACGGGCTAAAAACAACCTCGACATTCATGACTTTGACACCGGTATTCCCTTCCTTGAAGCCCGAGTCAATTGTCGCATGCTCGAGTTTCTTAAGCTCCAAGAAACTGAGTTGCTGAACCTTTTCGTTCCATTCCATCCCATTTGCAAGGAAACTGGTGATGAGTCTCTGCTCCCCATGCTAGCTTTTCAAGTGAATATCTTTGCTTGTGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

155

Amino Acids

17.59

Weight (kDa)

5.01

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 154	2.2e-23	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 199
AclWI	GGATC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	341
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	91, 178, 308, 440
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	112, 210, 346, 434
AluI	AGCT	4 cut(s)	112, 210, 346, 434
Alw26I	GTCTC	3 cut(s)	30, 215, 420
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	2 cut(s)	312, 332
AsiGI	ACCGGT	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	16, 419
AsuNHI	GCTAGC	1 cut(s)	430
AvaI	CYCGRG	2 cut(s)	312, 332
BccI	CCATC	3 cut(s)	50, 58, 393
BcoDI	GTCTC	3 cut(s)	30, 215, 420
BfaI	CTAG	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	341
BmeT110I	CYCGRG	2 cut(s)	312, 332
BmtI	GCTAGC	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	409
Bse8I	GATNNNNATC	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	312, 332
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	30, 215, 420
BsmFI	GGGAC	1 cut(s)	264
BsoBI	CYCGRG	2 cut(s)	312, 332
Bsp143I	GATC	3 cut(s)	18, 138, 160
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	120, 199
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	18, 138, 160
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	329, 432
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	3 cut(s)	21, 141, 163
BstMAI	GTCTC	3 cut(s)	30, 215, 420
BstMBI	GATC	3 cut(s)	18, 138, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 427
BstNSI	RCATGY	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	329, 432
CciI	TCATGA	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	290
CspAI	ACCGGT	1 cut(s)	290
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	4 cut(s)	13, 278, 328, 427
CviJI	RGCY	6 cut(s)	112, 210, 257, 311, 346, 434
CviKI_1	RGCY	6 cut(s)	112, 210, 257, 311, 346, 434
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	20, 140, 162
DpnII	GATC	3 cut(s)	18, 138, 160
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	312, 332
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 281, 331, 430
FaiI	YATR	6 cut(s)	14, 129, 131, 279, 329, 428
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	4 cut(s)	12, 277, 327, 426
FauI	CCCGC	2 cut(s)	127, 206
FokI	GGATG	1 cut(s)	372
FspBI	CTAG	1 cut(s)	431
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	16, 281, 331, 430
HinfI	GANTC	5 cut(s)	59, 115, 223, 315, 413
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	16, 419
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	33, 249, 278
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 427
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	16, 281, 331, 430
Kzo9I	GATC	3 cut(s)	18, 138, 160
LmnI	GCTCC	3 cut(s)	215, 351, 426
LpnPI	CCDG	4 cut(s)	46, 122, 304, 390
MaeI	CTAG	1 cut(s)	431
MalI	GATC	3 cut(s)	20, 140, 162
MboI	GATC	3 cut(s)	18, 138, 160
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	319
MluCI	AATT	1 cut(s)	319
MlyI	GAGTC	4 cut(s)	109, 217, 324, 422
MnlI	CCTC	5 cut(s)	73, 110, 194, 224, 278
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	4 cut(s)	72, 80, 203, 342
MspA1I	CMGCKG	1 cut(s)	112
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	207, 427
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	3 cut(s)	18, 138, 160
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	16, 281, 331, 430
NspI	RCATGY	1 cut(s)	331
PaeI	GCATGC	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	290
PleI	GAGTC	4 cut(s)	109, 217, 323, 421
PpsI	GAGTC	4 cut(s)	109, 217, 323, 421
PspXI	VCTCGAGB	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	72, 80, 203, 342
Sau3AI	GATC	3 cut(s)	18, 138, 160
SchI	GAGTC	4 cut(s)	109, 217, 324, 422
SetI	ASST	6 cut(s)	114, 212, 270, 348, 372, 436
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	332, 341
SmoI	CTYRAG	2 cut(s)	332, 341
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	2 cut(s)	120, 199
SspMI	CTAG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	5 cut(s)	57, 105, 186, 270, 333
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	72, 80, 203, 342
Tru9I	TTAA	4 cut(s)	72, 80, 203, 342
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	341
XceI	RCATGY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.