Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Forward (+)

36987012 .. 36988377

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTGAACACCATGGAGATCAGTATCATTTCCAGAGACACCATCAAACCATCGCTCGATTCCTCTTCACTTAACCATTTAAGTCCTTTCAAACTTTCCCTCATCGACCAGCTGACTCCCGCAACTTATATGCCACTGATCTTGTTCTACCCCATTAGTGATCCCAAGTCATCGTTCAATCTCCTCGAAACCCTAACCCGCTTAAAAAGCTCCCTCTCCGAGACTCTCACTCTCTACTATCCATTTTCGGGACGGGCTAAAAACAACCTCGACATTCATGACTTTGACACCGGTATTCCCTTCCTTGAAGCCCGAGTCAATTGTCGCATGCTCGAGTTTCTTAAGCTCCAAGAAACTGAGTTGCTGAACCTTTTCGTTCCATTCCATCCCATTTGCAAGGAAACTGTAATTGGGGGATCCGCTTCTCACAAGTTATGTGATGGGTTGGCCGCGAACTCTATCCTTGAGTCTTGGTCTGCTATTTTTCATGGGGAGTGCGACAAAATAATACACCCTAATTTCTCCCAAGCCTCATCGCTCTTTCCTCCAAGAGCTTTGTTGCCTAAAAAGTATCTAGATTTAGCAAATAGCTTTTGGTTCAAGGAAAACTATTATGTTACAAGGAGATTTGTGTTTAGTGTCAAAGCCATAGCCACACTACAAGAAAAATCGAAGAGCAAATGCGTGCCCAAGCCATCACGTAATGACGCACTCACATGTTTTATTTGGAAACATGCAATGGCTTCTTCTCAGGTTCTGTTACCAGGTTCCTCACCAAGAACTTCCATAGTAGCGCATGCAATGAACATGAGATCACGGATGAAGCCACAAACGTCGTCAGCTAATATCATAGGAAATTTCTTTTGGTGGGTGGCAACAGTCGCCGACTCATCTAAGCTAGCAGAAGATCATGAGTTATGTGACTTGGTTCACCTGATTAATGAATCTCACAAAGGATTTGATAGGGGTTATTTTGAGTCTCATCAGGGAGAAGAGGGATTTGGAGCCATTGGAAACTTCTTTTATCAACTAGAAGTCTTGCTTTCTTCAAAACCCCCACCAGAACTTTATTTATTCACCAATTGGACAAGCATTTTTCACAAATTGGATTTTGGTGGGGGAAGCCTTTCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

378

Amino Acids

42.54

Weight (kDa)

7.2

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 375	5.6e-40	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	452
AciI	CCGC	4 cut(s)	120, 199, 420, 450
AclWI	GGATC	3 cut(s)	155, 411, 424
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	856
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	716
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	5 cut(s)	91, 178, 308, 601, 1050
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	8 cut(s)	158, 190, 393, 425, 847, 879, 984, 1016
AluBI	AGCT	7 cut(s)	112, 210, 346, 554, 591, 842, 898
AluI	AGCT	7 cut(s)	112, 210, 346, 554, 591, 842, 898
Alw26I	GTCTC	3 cut(s)	30, 215, 984
AlwI	GGATC	3 cut(s)	155, 411, 424
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	2 cut(s)	312, 332
AoxI	GGCC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	856
AseI	ATTAAT	1 cut(s)	939
AsiGI	ACCGGT	1 cut(s)	290
Asp700I	GAANNNNTTC	2 cut(s)	371, 1126
AspLEI	GCGC	1 cut(s)	796
AsuHPI	GGTGA	4 cut(s)	16, 765, 923, 1069
AsuNHI	GCTAGC	1 cut(s)	898
AvaI	CYCGRG	2 cut(s)	312, 332
BaeGI	GKGCMC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	416
BccI	CCATC	5 cut(s)	50, 58, 393, 434, 703
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	3 cut(s)	30, 215, 984
BfaI	CTAG	3 cut(s)	575, 899, 1031
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	765
BmeT110I	CYCGRG	2 cut(s)	312, 332
BmiI	GGNNCC	3 cut(s)	418, 769, 1006
BmrFI	CCNGG	1 cut(s)	765
BmtI	GCTAGC	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	744, 807
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	385, 825
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	2 cut(s)	744, 807
BseMII	CTCAG	2 cut(s)	348, 764
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	449
BshTI	ACCGGT	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	312, 332
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	30, 215, 984
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	449
BsoBI	CYCGRG	2 cut(s)	312, 332
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	120, 199, 420, 450
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	2 cut(s)	349, 763
BspFNI	CGCG	1 cut(s)	452
BspHI	TCATGA	2 cut(s)	277, 910
BspLI	GGNNCC	3 cut(s)	418, 769, 1006
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	3 cut(s)	155, 411, 424
BspQI	GCTCTTC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	744, 807
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	2 cut(s)	406, 880
Bst6I	CTCTTC	3 cut(s)	70, 668, 987
BstAFI	CTTAAG	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	329, 686, 798, 900
BstDEI	CTNAG	3 cut(s)	357, 750, 894
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	385, 825
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	6 cut(s)	21, 141, 163, 419, 815, 910
BstMAI	GTCTC	3 cut(s)	30, 215, 984
BstMBI	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 881
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	4 cut(s)	331, 720, 737, 800
BstSCI	CCNGG	1 cut(s)	763
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	2 cut(s)	36, 519
BtsCI	GGATG	2 cut(s)	385, 825
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	329, 686, 798, 900
CaiI	CAGNNNCTG	1 cut(s)	757
CciI	TCATGA	2 cut(s)	277, 910
CfoI	GCGC	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	716
CsiI	ACCWGGT	1 cut(s)	763
CspAI	ACCGGT	1 cut(s)	290
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	9 cut(s)	13, 278, 328, 488, 717, 734, 797, 808, 911
DdeI	CTNAG	3 cut(s)	357, 750, 894
DpnI	GATC	6 cut(s)	20, 140, 162, 418, 814, 909
DpnII	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	70, 668, 987
EarI	CTCTTC	3 cut(s)	70, 668, 987
Eco130I	CCWWGG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	312, 332
EcoRII	CCWGG	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	9 cut(s)	16, 281, 331, 491, 720, 737, 800, 811, 914
FalI	AAGNNNNNCTT	2 cut(s)	1026, 1058
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	9 cut(s)	12, 277, 327, 487, 716, 733, 796, 807, 910
FauI	CCCGC	2 cut(s)	127, 206
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	372, 832
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	3 cut(s)	575, 899, 1031
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	9 cut(s)	16, 281, 331, 491, 720, 737, 800, 811, 914
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	8 cut(s)	59, 115, 223, 315, 467, 887, 944, 977
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	4 cut(s)	16, 765, 923, 1069
Hpy166II	GTNNAC	2 cut(s)	7, 931
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	5 cut(s)	33, 249, 278, 575, 911
Hpy8I	GTNNAC	2 cut(s)	7, 931
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	406, 880
HpyCH4IV	ACGT	2 cut(s)	700, 833
HpyCH4V	TGCA	3 cut(s)	396, 737, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 881
HpyF3I	CTNAG	3 cut(s)	357, 750, 894
HpySE526I	ACGT	2 cut(s)	700, 833
Hsp92II	CATG	9 cut(s)	16, 281, 331, 491, 720, 737, 800, 811, 914
HspAI	GCGC	1 cut(s)	794
Kzo9I	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	3 cut(s)	215, 351, 1004
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	3 cut(s)	575, 899, 1031
MaeII	ACGT	2 cut(s)	700, 833
MaeIII	GTNAC	3 cut(s)	616, 759, 920
MalI	GATC	6 cut(s)	20, 140, 162, 418, 814, 909
MboI	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
MboII	GAAGA	6 cut(s)	57, 685, 738, 917, 1004, 1038
MfeI	CAATTG	2 cut(s)	319, 1081
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	6 cut(s)	319, 408, 517, 856, 1081, 1103
MlyI	GAGTC	6 cut(s)	109, 217, 324, 476, 881, 986
MnlI	CCTC	9 cut(s)	73, 110, 194, 224, 278, 541, 555, 781, 988
MroXI	GAANNNNTTC	2 cut(s)	371, 1126
MseI	TTAA	5 cut(s)	72, 80, 203, 342, 939
MslI	CAYNNNNRTG	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	112
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	765
MunI	CAATTG	2 cut(s)	319, 1081
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	207, 881
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	9 cut(s)	16, 281, 331, 491, 720, 737, 800, 811, 914
NlaIV	GGNNCC	3 cut(s)	418, 769, 1006
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	4 cut(s)	331, 720, 737, 800
PaeI	GCATGC	2 cut(s)	331, 800
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	2 cut(s)	277, 910
PciI	ACATGT	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	668
PdmI	GAANNNNTTC	2 cut(s)	371, 1126
PfeI	GAWTC	2 cut(s)	59, 944
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	6 cut(s)	109, 217, 323, 475, 881, 985
PpsI	GAGTC	6 cut(s)	109, 217, 323, 475, 881, 985
Ppu21I	YACGTR	1 cut(s)	701
PscI	ACATGT	1 cut(s)	716
PshBI	ATTAAT	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	418, 769, 1006
PspXI	VCTCGAGB	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	715
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	5 cut(s)	72, 80, 203, 342, 939
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	6 cut(s)	18, 138, 160, 416, 812, 907
SchI	GAGTC	6 cut(s)	109, 217, 324, 476, 881, 986
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	690
SexAI	ACCWGGT	1 cut(s)	763
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	715
SmlI	CTYRAG	3 cut(s)	332, 341, 464
SmoI	CTYRAG	3 cut(s)	332, 341, 464
SphI	GCATGC	2 cut(s)	331, 800
Sse9I	AATT	6 cut(s)	319, 408, 517, 856, 1081, 1103
SsiI	CCGC	4 cut(s)	120, 199, 420, 450
SspMI	CTAG	3 cut(s)	575, 899, 1031
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	406, 880
TaiI	ACGT	2 cut(s)	703, 836
TaqI	TCGA	6 cut(s)	57, 105, 186, 270, 333, 671
TasI	AATT	6 cut(s)	319, 408, 517, 856, 1081, 1103
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	59, 944
Tru1I	TTAA	5 cut(s)	72, 80, 203, 342, 939
Tru9I	TTAA	5 cut(s)	72, 80, 203, 342, 939
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	266, 476, 818, 836, 957
TspGWI	ACGGA	1 cut(s)	832
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	1 cut(s)	856
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	4 cut(s)	331, 720, 737, 800
XhoI	CTCGAG	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	371, 1126
XspI	CTAG	3 cut(s)	575, 899, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.