Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005543

Physical Location & Seq

Genomic Coordinates Reverse (-)

14374707 .. 14376299

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGATCAGTATCATTTCCAGAGACACCATCAAACCATCGCTCGATTCCTGTTCACTTAAACATGTAAGCCCTTTCAAACTTTCCCTCGTCGACCAGCTGACTCCCGCAACTTATATGCCACTAATCTTGTTCTACCCCATTAGCGACCCCAAGTCGTCGCTCAATCTCCTCGAAACCCTAACCCGCTTAAAAAGCTCCCTCTCCGAGACTCTCACTCTCTACTACCCATTTTCGGGACGGGCTAAAAACAACCTCTACATTCATGACTTTGACACCGGTATTCCCTTCCTTGAAGCTCGAGTCAACTGTCGCATGCTCCAGTTTCTTAAGCTCCAAGAAACCGAGTTGCTGAACCGTTTCGTTCCATTCCATCCCATTTGCAAGGAAACTGGTGATGAGTCTCTGCTCCCGATGATAGCTTTTCAAGTGACTGTCTTTGCTTGTGGTGGAATAGCAATTGGGGGATCCGCTTCTCACAAGCTATGTGATGGGTTGACCGCCAACTCTATCCTCGAGTCTTGGGCTGCTATTTTTCGTGGGGAGCTTGACAAAATAATACTCCCTAATTTCTCCCAAGCCTCATCTGTCTTTCCACCAAGAGCTCTGTTGCCTAAAAAGTATCTAGATTTAGTAGATAGCTTTTGGTTCAAGGAAAACAATTATGTTACAAGGAGATTTGTGTTTAGTGTCAAAGCCATAGCCACACTACAAGAAAAATCGAAGAGCAAATGCGTGCCCAAGCCATCACGTAATGAGGCACTCACATGTTTTATTTGGAAACATGCAATGGCTTCTTCTCGGGCACTATCACCAGGTACTTTACCAAGAACATCCATAGTAGCGCACGCAATGAACATGAGATCACGGATGAAGCCACAAATGTACACGTCGTCAACTAATATCATTGGAAATTTCTTTTGGTGGGCAACAACAATTGCGGACTCATCTAAGCTAGGAGAAGATCATGAGTTATGTGACTTGGTGCACCTGATTAATGAATCTCTCAAACGATTTGATAGGGATTATTCCAAGTCTCATCAGGGAGAAGAGGGATTTGGATCCATTTCAAACTACTTTAATCAACTAGAAGTCTTGCTTTCTTCAAAATCCCCACCAGAAGTTTATTTATTCACCAGTTGGACAAGCATTTTTCACAAATTGGATTTTGGATGGGGGAAGCCTTTCTGGGTAGGGCTCATGGGGAAAGTCGGGCCTGAGTTTAGGAACTTCACGGTGTTCATGGAAGCACAATGTGGTAAAGGAATTGAAGCGTGGGTGACCTTGGAGGCAAAGCAAATGGCTCTGCTCGAAAAAGACCTTAAGTTTCTAGCGTTTGCTTCTCCAAATTCTCGGATTTCAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

456

Amino Acids

51.5

Weight (kDa)

8.8

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 442	2.1e-68	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06720
rosa_chinensis	RchiOBHm_Chr1g0362371 RchiOBHm_Chr1g0362381
rosa_laevigata	RLG00000008114 RLG00000008115 RLG00000018584
rosa_multiflora	Rmu_co8190972.1_g000001 Rmu_sc0001192.1_g000046 Rmu_sc0003260.1_g000002 Rmu_sc0003260.1_g000003 Rmu_sc0013178.1_g000003 Rmu_sc0013947.1_g000004 Rmu_sc0013947.1_g000005
rosa_roxburghii	Rroxscaffold_2G00122880 Rroxscaffold_4G00294220 Rroxscaffold_5G00355160
rosa_rugosa	Rorug01G0297800 Rorug01G0297800 Rorug04G0114800
rosa_samantha	Rh1AG306700 Rh1CG287700 Rh1DG300500 Rh4AG188900 Rh4AG189000 Rh4DG155800 Rh4DG187800
rosa_wichuraiana	Rw1G027250 Rw4G013470 Rw4G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	5 cut(s)	108, 187, 471, 501, 941
AclWI	GGATC	4 cut(s)	462, 475, 1056, 1069
AcsI	RAATTY	2 cut(s)	913, 1348
AdeI	CACNNNGTG	1 cut(s)	1256
AfaI	GTAC	2 cut(s)	820, 887
AfiI	CCNNNNNNNGG	2 cut(s)	235, 236
AflII	CTTAAG	2 cut(s)	329, 1322
AflIII	ACRYGT	3 cut(s)	64, 767, 888
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	8 cut(s)	79, 296, 428, 652, 1071, 1107, 1271, 1362
AhdI	GACNNNNNGTC	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	891
AjnI	CCWGG	1 cut(s)	814
AjuI	GAANNNNNNNTTGG	4 cut(s)	904, 936, 1041, 1073
Alw21I	GWGCWC	2 cut(s)	607, 990
Alw26I	GTCTC	4 cut(s)	18, 203, 408, 1041
Alw44I	GTGCAC	1 cut(s)	986
AlwI	GGATC	4 cut(s)	462, 475, 1056, 1069
Ama87I	CYCGRG	3 cut(s)	300, 515, 801
AoxI	GGCC	1 cut(s)	1214
ApaLI	GTGCAC	1 cut(s)	986
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	913, 1348
AseI	ATTAAT	1 cut(s)	996
AsiGI	ACCGGT	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	359, 1184
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	1 cut(s)	1214
AsuHPI	GGTGA	4 cut(s)	407, 804, 1126, 1291
AvaI	CYCGRG	3 cut(s)	300, 515, 801
BaeGI	GKGCMC	3 cut(s)	741, 808, 990
BamHI	GGATCC	2 cut(s)	467, 1061
BanII	GRGCYC	2 cut(s)	607, 1200
Bbv12I	GWGCWC	2 cut(s)	607, 990
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	6 cut(s)	38, 46, 381, 485, 754, 1167
BciT130I	CCWGG	1 cut(s)	816
BcoDI	GTCTC	4 cut(s)	18, 203, 408, 1041
BfaI	CTAG	4 cut(s)	626, 956, 1088, 1331
BfrI	CTTAAG	2 cut(s)	329, 1322
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	816
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	3 cut(s)	300, 515, 801
BmgBI	CACGTC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	1214
BmiI	GGNNCC	2 cut(s)	469, 1063
BmrFI	CCNGG	1 cut(s)	816
BpmI	CTGGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	752
BsaBI	GATNNNNATC	2 cut(s)	11, 1060
BsaJI	CCNNGG	1 cut(s)	1284
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 236
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	322, 397, 1137
Bse3DI	GCAATG	2 cut(s)	795, 858
Bse8I	GATNNNNATC	2 cut(s)	11, 1060
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	1284
BseGI	GGATG	4 cut(s)	373, 833, 876, 1178
BseJI	GATNNNNATC	2 cut(s)	11, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	235, 236
BseMI	GCAATG	2 cut(s)	795, 858
BseMII	CTCAG	1 cut(s)	1209
BseNI	ACTGG	3 cut(s)	322, 397, 1137
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	3 cut(s)	741, 808, 990
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	1 cut(s)	1216
BshTI	ACCGGT	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	607, 990
BsiHKCI	CYCGRG	3 cut(s)	300, 515, 801
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	235, 236
BsmAI	GTCTC	4 cut(s)	18, 203, 408, 1041
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	1216
BsoBI	CYCGRG	3 cut(s)	300, 515, 801
Bsp1286I	GDGCHC	5 cut(s)	607, 741, 808, 990, 1200
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	6, 467, 863, 964, 1061
BspACI	CCGC	5 cut(s)	108, 187, 471, 501, 941
BspANI	GGCC	1 cut(s)	1216
BspCNI	CTCAG	1 cut(s)	1210
BspHI	TCATGA	2 cut(s)	265, 967
BspLI	GGNNCC	2 cut(s)	469, 1063
BspPI	GGATC	4 cut(s)	462, 475, 1056, 1069
BspQI	GCTCTTC	1 cut(s)	719
BspTI	CTTAAG	2 cut(s)	329, 1322
BsrDI	GCAATG	2 cut(s)	795, 858
BsrFI	RCCGGY	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	322, 397, 1137
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	1284
BssMI	GATC	5 cut(s)	6, 467, 863, 964, 1061
BssT1I	CCWWGG	1 cut(s)	1284
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	4 cut(s)	311, 359, 436, 1237
Bst6I	CTCTTC	2 cut(s)	719, 1044
BstAFI	CTTAAG	2 cut(s)	329, 1322
BstAUI	TGTACA	1 cut(s)	885
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	317, 737, 849
BstDEI	CTNAG	2 cut(s)	951, 1218
BstEII	GGTNACC	1 cut(s)	1279
BstF5I	GGATG	4 cut(s)	373, 833, 876, 1178
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	5 cut(s)	9, 470, 866, 967, 1064
BstMAI	GTCTC	4 cut(s)	18, 203, 408, 1041
BstMBI	GATC	5 cut(s)	6, 467, 863, 964, 1061
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	5 cut(s)	68, 319, 771, 788, 1369
BstPI	GGTNACC	1 cut(s)	1279
BstSCI	CCNGG	1 cut(s)	814
BstSLI	GKGCMC	3 cut(s)	741, 808, 990
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	467, 1061
BstYI	RGATCY	2 cut(s)	467, 1061
BsuRI	GGCC	1 cut(s)	1216
BtgZI	GCGATG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	4 cut(s)	373, 833, 876, 1178
Cac8I	GCNNGC	3 cut(s)	317, 737, 849
CciI	TCATGA	2 cut(s)	265, 967
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	1214
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	819, 886
CspAI	ACCGGT	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviQI	GTAC	2 cut(s)	819, 886
DdeI	CTNAG	2 cut(s)	951, 1218
DpnI	GATC	5 cut(s)	8, 469, 865, 966, 1063
DpnII	GATC	5 cut(s)	6, 467, 863, 964, 1061
DraIII	CACNNNGTG	1 cut(s)	1256
DriI	GACNNNNNGTC	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	719, 1044
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	2 cut(s)	719, 1044
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	1284
Eco24I	GRGCYC	2 cut(s)	607, 1200
Eco53kI	GAGCTC	1 cut(s)	605
Eco88I	CYCGRG	3 cut(s)	300, 515, 801
Eco91I	GGTNACC	1 cut(s)	1279
EcoICRI	GAGCTC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	1279
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	1284
EcoT38I	GRGCYC	2 cut(s)	607, 1200
ErhI	CCWWGG	1 cut(s)	1284
FalI	AAGNNNNNCTT	2 cut(s)	1083, 1115
FaqI	GGGAC	1 cut(s)	252
FauI	CCCGC	2 cut(s)	115, 194
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	4 cut(s)	360, 820, 883, 1185
FriOI	GRGCYC	2 cut(s)	607, 1200
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	4 cut(s)	626, 956, 1088, 1331
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	1216
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	847
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	4 cut(s)	94, 307, 498, 897
HindII	GTYRAC	4 cut(s)	94, 307, 498, 897
HinfI	GANTC	8 cut(s)	47, 103, 211, 303, 401, 518, 944, 1001
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	4 cut(s)	407, 804, 1126, 1291
Hpy166II	GTNNAC	7 cut(s)	56, 94, 307, 498, 888, 897, 988
Hpy188I	TCNGA	2 cut(s)	208, 1356
Hpy188III	TCNNGA	6 cut(s)	21, 237, 266, 412, 626, 968
Hpy8I	GTNNAC	7 cut(s)	56, 94, 307, 498, 888, 897, 988
Hpy99I	CGWCG	3 cut(s)	95, 163, 895
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	4 cut(s)	311, 359, 436, 1237
HpyCH4IV	ACGT	2 cut(s)	751, 890
HpyCH4V	TGCA	3 cut(s)	384, 788, 988
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	951, 1218
HpySE526I	ACGT	2 cut(s)	751, 890
HspAI	GCGC	1 cut(s)	845
Kzo9I	GATC	5 cut(s)	6, 467, 863, 964, 1061
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	5 cut(s)	203, 324, 339, 414, 544
Lsp1109I	GCAGC	1 cut(s)	514
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	4 cut(s)	626, 956, 1088, 1331
MaeII	ACGT	2 cut(s)	751, 890
MaeIII	GTNAC	4 cut(s)	430, 667, 977, 1279
MalI	GATC	5 cut(s)	8, 469, 865, 966, 1063
MboI	GATC	5 cut(s)	6, 467, 863, 964, 1061
MboII	GAAGA	5 cut(s)	736, 789, 974, 1061, 1095
MfeI	CAATTG	2 cut(s)	459, 936
MflI	RGATCY	2 cut(s)	467, 1061
MhlI	GDGCHC	5 cut(s)	607, 741, 808, 990, 1200
MluCI	AATT	8 cut(s)	459, 568, 661, 913, 936, 1160, 1266, 1348
MlyI	GAGTC	6 cut(s)	97, 205, 312, 410, 527, 938
MmeI	TCCRAC	1 cut(s)	1121
MnlI	CCTC	9 cut(s)	98, 182, 212, 266, 524, 592, 751, 1045, 1282
MroXI	GAANNNNTTC	2 cut(s)	359, 1184
MseI	TTAA	6 cut(s)	60, 191, 330, 996, 1080, 1323
MslI	CAYNNNNRTG	1 cut(s)	766
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	2 cut(s)	329, 1322
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	816
MunI	CAATTG	2 cut(s)	459, 936
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	5 cut(s)	6, 467, 863, 964, 1061
NlaIV	GGNNCC	2 cut(s)	469, 1063
NmuCI	GTSAC	3 cut(s)	430, 977, 1279
NspI	RCATGY	5 cut(s)	68, 319, 771, 788, 1369
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	2 cut(s)	300, 515
PagI	TCATGA	2 cut(s)	265, 967
PciI	ACATGT	2 cut(s)	64, 767
PciSI	GCTCTTC	1 cut(s)	719
PdmI	GAANNNNTTC	2 cut(s)	359, 1184
PfeI	GAWTC	2 cut(s)	47, 1001
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	6 cut(s)	97, 205, 311, 409, 526, 938
PpsI	GAGTC	6 cut(s)	97, 205, 311, 409, 526, 938
Ppu21I	YACGTR	1 cut(s)	752
PscI	ACATGT	2 cut(s)	64, 767
PshBI	ATTAAT	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	814
PspEI	GGTNACC	1 cut(s)	1279
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	2 cut(s)	469, 1063
PspPI	GGNCC	1 cut(s)	1214
PspXI	VCTCGAGB	2 cut(s)	300, 515
PsuI	RGATCY	2 cut(s)	467, 1061
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	820, 887
RsaNI	GTAC	2 cut(s)	819, 886
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	607
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	6 cut(s)	60, 191, 330, 996, 1080, 1323
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	5 cut(s)	6, 467, 863, 964, 1061
Sau96I	GGNCC	1 cut(s)	1214
SchI	GAGTC	6 cut(s)	97, 205, 312, 410, 527, 938
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	5 cut(s)	607, 741, 808, 990, 1200
SexAI	ACCWGGT	1 cut(s)	814
Sfr274I	CTCGAG	2 cut(s)	300, 515
SlaI	CTCGAG	2 cut(s)	300, 515
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	4 cut(s)	300, 329, 515, 1322
SmoI	CTYRAG	4 cut(s)	300, 329, 515, 1322
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	8 cut(s)	459, 568, 661, 913, 936, 1160, 1266, 1348
SsiI	CCGC	5 cut(s)	108, 187, 471, 501, 941
SspMI	CTAG	4 cut(s)	626, 956, 1088, 1331
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	1284
TaaI	ACNGT	4 cut(s)	311, 359, 436, 1237
TaiI	ACGT	2 cut(s)	754, 893
TaqI	TCGA	7 cut(s)	45, 93, 174, 301, 516, 722, 1311
TasI	AATT	8 cut(s)	459, 568, 661, 913, 936, 1160, 1266, 1348
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	2 cut(s)	47, 1001
Tru1I	TTAA	6 cut(s)	60, 191, 330, 996, 1080, 1323
Tru9I	TTAA	6 cut(s)	60, 191, 330, 996, 1080, 1323
TseFI	GTSAC	3 cut(s)	430, 977, 1279
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	3 cut(s)	430, 977, 1279
TspDTI	ATGAA	5 cut(s)	254, 869, 887, 1014, 1231
TspGWI	ACGGA	1 cut(s)	883
Vha464I	CTTAAG	2 cut(s)	329, 1322
VneI	GTGCAC	1 cut(s)	986
VspI	ATTAAT	1 cut(s)	996
XapI	RAATTY	2 cut(s)	913, 1348
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	5 cut(s)	68, 319, 771, 788, 1369
XhoI	CTCGAG	2 cut(s)	300, 515
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	2 cut(s)	359, 1184
XspI	CTAG	4 cut(s)	626, 956, 1088, 1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.