Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002939

Physical Location & Seq

Genomic Coordinates Forward (+)

18063760 .. 18069863

Gene Structure 6104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0114800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCGGCGGCGGAGGAGTCAAGTGAGGCAGGCACCATGGGCGAAGAGGTTTTGAAGCTCAAAGAGAAGCTTTCTCAATGCCGACTCGAAATGGAGCGGCTCCTGACAGAGAAAAAGAGATGGAAGATCAAGAAGAAACTTCTCATGCGGGGTATAGAAAAACTAGAAGACAAGATTAGTAAAGAACGAGAAGTGTTTCTGTGTGAAGGATCTGAAAATTATGAGAGACAGATTACACTCTACAAGAACTTGAACACTACGAACAACAGTATGTGGCAGCTAGGGGACGAATTGTCCAAAGTAGATGACGAATTGGCCAAACTAGACGAGGAACAGTACAAGTTTTTTGATAGTGAAAGGCCTTGTGTGGGAACAGAAGTGGAGAAGAAAAGAAGGTGGTCACAATCAAAGACAGAGAAGCTGGATAAGCTATACTCAGAGATGAATAAGAAACGGGACGATTTATTAGCTTTTCTTGAAGCTCGTACAAAAAATGCAGAAATCACCGATGATGTGAAGGCTCTGGTGAGAGACTACTATACTCAATATATTGAGACACTCAAGACTGATGAGGACGAGTATGCACTGAAAACAAAGATTATGGATATTATTCTACCACCGGGTTCTTCTCAGAAGCAAATTGGGATGTTTGCCAGGGTTGATTCTATATCTCCAATCTCTGCTGGGATTTCAAAGATTTTGAACTTTCTAAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

239

Amino Acids

27.93

Weight (kDa)

5.96

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03050 AT5G03050
fragaria_vesca	FvH4_6g36280
malus_domestica	MD17G1156700.v1.1
prunus_persica	Prupe.3G028700_v2.0.a1 Prupe.3G028700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148291
rosa_laevigata	RLG00000020333
rosa_multiflora	Rmu_sc0002586.1_g000002 Rmu_sc0004032.1_g000014 Rmu_sc0006888.1_g000017 Rmu_sc0013350.1_g000016 Rmu_sc0015777.1_g000003 Rmu_sc0020359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00098940 Rroxscaffold_2G00129240 Rroxscaffold_3G00245520 Rroxscaffold_4G00297960 Rroxscaffold_4G00331090
rosa_rugosa	Rorug02G0405300 Rorug04G0114800 Rorug06G0390700
rosa_samantha	Rh1BG203400 Rh1DG153600 Rh1DG230400 Rh2AG464000 Rh2BG477000 Rh2CG450700 Rh2DG485800 Rh5AG015200 Rh5AG348400 Rh5CG016300 Rh5CG305700 Rh5DG523500 Rh6AG225300 Rh7DG482800
rosa_wichuraiana	Rw2G037820 Rw4G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	4 cut(s)	8, 11, 97, 148
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	315
AfaI	GTAC	2 cut(s)	338, 487
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	55, 253, 479, 693, 703
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	653
AluBI	AGCT	7 cut(s)	58, 70, 280, 421, 430, 470, 482
AluI	AGCT	7 cut(s)	58, 70, 280, 421, 430, 470, 482
Alw26I	GTCTC	3 cut(s)	220, 525, 548
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	315, 359
ApeKI	GCWGC	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	2 cut(s)	496, 538
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	3 cut(s)	220, 525, 548
BfaI	CTAG	3 cut(s)	164, 281, 323
BisI	GCNGC	3 cut(s)	9, 98, 278
BlsI	GCNGC	3 cut(s)	10, 99, 279
Bme1390I	CCNGG	2 cut(s)	621, 655
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	34, 101
BmrFI	CCNGG	2 cut(s)	621, 655
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	36, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	655
BseDI	CCNNGG	2 cut(s)	36, 654
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	450, 644
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	683
BshFI	GGCC	2 cut(s)	317, 361
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	299, 470
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	3 cut(s)	220, 525, 548
BsmFI	GGGAC	2 cut(s)	299, 470
BsnI	GGCC	2 cut(s)	317, 361
Bsp143I	GATC	2 cut(s)	126, 209
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	4 cut(s)	8, 11, 97, 148
BspANI	GGCC	2 cut(s)	317, 361
BspCNI	CTCAG	2 cut(s)	449, 643
BspLI	GGNNCC	2 cut(s)	34, 101
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	36, 654
BssMI	GATC	2 cut(s)	126, 209
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	2 cut(s)	269, 336
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	436, 630, 710
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	651
BstKTI	GATC	2 cut(s)	129, 212
BstMAI	GTCTC	3 cut(s)	220, 525, 548
BstMBI	GATC	2 cut(s)	126, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 427
BstNI	CCWGG	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	619, 653
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	317, 361
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	337, 486
CviAII	CATG	2 cut(s)	37, 145
CviQI	GTAC	2 cut(s)	337, 486
DdeI	CTNAG	3 cut(s)	436, 630, 710
DpnI	GATC	2 cut(s)	128, 211
DpnII	GATC	2 cut(s)	126, 209
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	39
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	40, 148
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	2 cut(s)	299, 470
FatI	CATG	2 cut(s)	36, 144
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	9, 98, 278
FokI	GGATG	1 cut(s)	658
Fsp4HI	GCNGC	3 cut(s)	9, 98, 278
FspBI	CTAG	3 cut(s)	164, 281, 323
GluI	GCNGC	3 cut(s)	9, 98, 278
GsaI	CCCAGC	1 cut(s)	687
HaeIII	GGCC	2 cut(s)	317, 361
HapII	CCGG	1 cut(s)	620
Hin1II	CATG	2 cut(s)	40, 148
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	3 cut(s)	17, 84, 662
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	2 cut(s)	496, 538
Hpy188I	TCNGA	3 cut(s)	214, 439, 633
Hpy188III	TCNNGA	4 cut(s)	103, 130, 476, 562
HpyAV	CCTTC	3 cut(s)	200, 387, 511
HpyCH4III	ACNGT	2 cut(s)	269, 336
HpyCH4V	TGCA	2 cut(s)	497, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 427
HpyF3I	CTNAG	3 cut(s)	436, 630, 710
Hsp92II	CATG	2 cut(s)	40, 148
Kzo9I	GATC	2 cut(s)	126, 209
LmnI	GCTCC	2 cut(s)	94, 105
LpnPI	CCDG	8 cut(s)	15, 116, 407, 509, 633, 640, 667, 669
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	164, 281, 323
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	2 cut(s)	128, 211
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	2 cut(s)	126, 209
MboII	GAAGA	6 cut(s)	56, 136, 145, 179, 397, 618
MflI	RGATCY	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	4 cut(s)	217, 290, 311, 639
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	26, 78
MnlI	CCTC	5 cut(s)	7, 19, 40, 322, 565
Mox20I	TGGCCA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	621, 655
MvaI	CCWGG	1 cut(s)	655
MwoI	GCNNNNNNNGC	2 cut(s)	39, 427
NciI	CCSGG	1 cut(s)	621
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	126, 209
NlaIII	CATG	2 cut(s)	40, 148
NlaIV	GGNNCC	2 cut(s)	34, 101
NmuCI	GTSAC	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	10, 99, 279
PleI	GAGTC	2 cut(s)	25, 78
PpsI	GAGTC	2 cut(s)	25, 78
Psp6I	CCWGG	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	34, 101
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	338, 487
RsaNI	GTAC	2 cut(s)	337, 486
SatI	GCNGC	3 cut(s)	9, 98, 278
Sau3AI	GATC	2 cut(s)	126, 209
SchI	GAGTC	2 cut(s)	26, 78
ScrFI	CCNGG	2 cut(s)	621, 655
SetI	ASST	9 cut(s)	51, 60, 72, 282, 398, 423, 432, 472, 484
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	217, 290, 311, 639
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	4 cut(s)	8, 11, 97, 148
SspMI	CTAG	3 cut(s)	164, 281, 323
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	619, 653
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	269, 336
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	217, 290, 311, 639
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	2 cut(s)	11, 100
TfiI	GAWTC	1 cut(s)	662
TscAI	CASTG	1 cut(s)	591
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	3 cut(s)	164, 281, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.