Rh6AG225300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002939
Physical Location & Seq
Forward (+)
40617610 .. 40618007
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG225300.1

Sequence Viewer

Length: 312 bp
ATGAAGAATATGGCCGGAGGTTGCATGAATTTGAGGTCGAATCAGCTTCCTCCAATGAGCTCTGGTAAAAACTCCAAAGAGAGGTTCGTTGAATTAGGCATAGATTTTTGTACAGATAAGGTGTTTGGTGAGATGCTTGTGAGAAATAGTAGTGACTGTGATTGTAGATTGAATCTGATTCACAAGGAGCAAATGGAGAAATGGCAGGAGGAGATCAGAGAGTTGCGCGTGATTGATGCTTCGAATAAGGAGGCTAGTGCTGTGCTGCATAATGCTACATATTTGCTTCAGAATCCTCATGTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

6.28

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 92, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 2 cut(s) 46, 60
AluI AGCT 2 cut(s) 46, 60
Alw21I GWGCWC 1 cut(s) 62
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 252
BfaI CTAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmsI GCATC 2 cut(s) 123, 226
Bpu14I TTCGAA 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 110
Bsp143I GATC 1 cut(s) 213
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 110
BssMI GATC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 242
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 14
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 25, 299
CviJI RGCY 4 cut(s) 14, 46, 60, 254
CviKI_1 RGCY 4 cut(s) 14, 46, 60, 254
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 2 cut(s) 28, 302
FaiI YATR 6 cut(s) 11, 26, 101, 270, 280, 300
FatI CATG 2 cut(s) 24, 298
Fnu4HI GCNGC 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 28, 302
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 4 cut(s) 40, 172, 178, 292
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 177, 218, 291
Hpy188III TCNNGA 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 24, 268
Hsp92II CATG 2 cut(s) 28, 302
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 28, 48, 191
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 123, 226
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 28, 92, 304
MnlI CCTC 7 cut(s) 11, 27, 60, 75, 202, 244, 306
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 228
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 28, 302
NmuCI GTSAC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 242
PfeI GAWTC 4 cut(s) 40, 172, 178, 292
PkrI GCNGC 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 22, 38, 48, 62, 86, 123
SfaNI GCATC 2 cut(s) 123, 226
SfuI TTCGAA 1 cut(s) 242
SgeI CNNG 9 cut(s) 27, 37, 75, 149, 196, 218, 239, 241, 267
Sse9I AATT 3 cut(s) 28, 92, 304
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 1 cut(s) 62
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 38, 242
TasI AATT 3 cut(s) 28, 92, 304
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 4 cut(s) 40, 172, 178, 292
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 17, 41
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.