Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002939

Physical Location & Seq

Genomic Coordinates Forward (+)

28538443 .. 28539077

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGAGCGAAGCAAACAGAAAACGCATGAAACCTGAGAGTCGCGAGGTAGGAGAGGGAGGTGTATCGGACTCGGAGATGGCGCAGAGGGAAGAGTTTGCTGGATCTGAAGAGGTGGAGCTTTCGATCAGTCAGATCCTTACGAAGATCGACCGGTTCACTGAGATGATTTCAGAGCTGCTTGATTCGGGGAAGGCGATGTTTAAGAAGATCAGTGATGAGTATGAGGAGAGATTGATCATGATTCACAAGGAGCAGATGGAGAAATGGCAGGAGGAGATCAGGGAGTTGCGCGCGATTGATGTTTCGAATGAGGAGGCTGGTGCTGTGCTGCACAATGCTGCATATTTGCTTCAGAATCCTCATGTTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.39

Weight (kDa)

4.65

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03050 AT5G03050
fragaria_vesca	FvH4_6g36280
malus_domestica	MD17G1156700.v1.1
prunus_persica	Prupe.3G028700_v2.0.a1 Prupe.3G028700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148291
rosa_laevigata	RLG00000020333
rosa_multiflora	Rmu_sc0002586.1_g000002 Rmu_sc0004032.1_g000014 Rmu_sc0006888.1_g000017 Rmu_sc0013350.1_g000016 Rmu_sc0015777.1_g000003 Rmu_sc0020359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00098940 Rroxscaffold_2G00129240 Rroxscaffold_3G00245520 Rroxscaffold_4G00297960 Rroxscaffold_4G00331090
rosa_rugosa	Rorug02G0405300 Rorug04G0114800 Rorug06G0390700
rosa_samantha	Rh1BG203400 Rh1DG153600 Rh1DG230400 Rh2AG464000 Rh2BG477000 Rh2CG450700 Rh2DG485800 Rh5AG015200 Rh5AG348400 Rh5CG016300 Rh5CG305700 Rh5DG523500 Rh6AG225300 Rh7DG482800
rosa_wichuraiana	Rw2G037820 Rw4G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	45, 294, 296
AclWI	GGATC	2 cut(s)	112, 130
AcuI	CTGAAG	2 cut(s)	129, 338
AgeI	ACCGGT	1 cut(s)	153
AluBI	AGCT	2 cut(s)	121, 178
AluI	AGCT	2 cut(s)	121, 178
AlwI	GGATC	2 cut(s)	112, 130
ApeKI	GCWGC	3 cut(s)	178, 331, 341
AsiGI	ACCGGT	1 cut(s)	153
AspLEI	GCGC	3 cut(s)	85, 294, 296
AsuII	TTCGAA	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	165, 318, 328
BccI	CCATC	2 cut(s)	73, 253
BclI	TGATCA	1 cut(s)	237
BisI	GCNGC	3 cut(s)	179, 332, 342
BlsI	GCNGC	3 cut(s)	180, 333, 343
Bpu14I	TTCGAA	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	27, 153
BsePI	GCGCGC	1 cut(s)	292
BseRI	GAGGAG	3 cut(s)	242, 290, 329
BseXI	GCAGC	3 cut(s)	165, 318, 328
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	3 cut(s)	45, 294, 296
Bsh1285I	CGRYCG	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	308
Bsp143I	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
Bsp68I	TCGCGA	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	28, 154
BspFNI	CGCG	3 cut(s)	45, 294, 296
BspHI	TCATGA	1 cut(s)	240
BspPI	GGATC	2 cut(s)	112, 130
BspT104I	TTCGAA	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssHII	GCGCGC	1 cut(s)	292
BssMI	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
Bst6I	CTCTTC	2 cut(s)	87, 105
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	36, 162
BstFNI	CGCG	3 cut(s)	45, 294, 296
BstHHI	GCGC	3 cut(s)	85, 294, 296
BstKTI	GATC	7 cut(s)	107, 129, 138, 150, 213, 240, 282
BstMBI	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
BstMCI	CGRYCG	1 cut(s)	154
BstUI	CGCG	3 cut(s)	45, 294, 296
BstV1I	GCAGC	3 cut(s)	165, 318, 328
BstX2I	RGATCY	2 cut(s)	104, 135
BstYI	RGATCY	2 cut(s)	104, 135
BtgZI	GCGATG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	159, 220
BtuMI	TCGCGA	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	3 cut(s)	85, 294, 296
Cfr10I	RCCGGY	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	153
CviAII	CATG	3 cut(s)	28, 241, 365
CviJI	RGCY	3 cut(s)	121, 178, 320
CviKI_1	RGCY	3 cut(s)	121, 178, 320
DdeI	CTNAG	2 cut(s)	36, 162
DpnI	GATC	7 cut(s)	106, 128, 137, 149, 212, 239, 281
DpnII	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
Eam1104I	CTCTTC	2 cut(s)	87, 105
EarI	CTCTTC	2 cut(s)	87, 105
Eco57I	CTGAAG	2 cut(s)	129, 338
FaeI	CATG	3 cut(s)	31, 244, 368
FaiI	YATR	5 cut(s)	29, 225, 242, 346, 366
FatI	CATG	3 cut(s)	27, 240, 364
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	179, 332, 342
Fsp4HI	GCNGC	3 cut(s)	179, 332, 342
GlaI	GCGC	3 cut(s)	84, 293, 295
GluI	GCNGC	3 cut(s)	179, 332, 342
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	3 cut(s)	85, 294, 296
Hin1II	CATG	3 cut(s)	31, 244, 368
Hin6I	GCGC	3 cut(s)	83, 292, 294
HinP1I	GCGC	3 cut(s)	83, 292, 294
HinfI	GANTC	6 cut(s)	40, 71, 185, 244, 358, 371
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	6 cut(s)	70, 76, 109, 135, 175, 357
Hpy188III	TCNNGA	3 cut(s)	44, 241, 375
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	334, 344
HpyF3I	CTNAG	2 cut(s)	36, 162
Hsp92II	CATG	3 cut(s)	31, 244, 368
HspAI	GCGC	3 cut(s)	83, 292, 294
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
LmnI	GCTCC	2 cut(s)	118, 253
LpnPI	CCDG	6 cut(s)	48, 87, 167, 257, 268, 306
Lsp1109I	GCAGC	3 cut(s)	165, 318, 328
MalI	GATC	7 cut(s)	106, 128, 137, 149, 212, 239, 281
MboI	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
MboII	GAAGA	4 cut(s)	104, 122, 157, 220
MflI	RGATCY	2 cut(s)	104, 135
MlyI	GAGTC	2 cut(s)	49, 65
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	1 cut(s)	154
MvnI	CGCG	3 cut(s)	45, 294, 296
NdeII	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
NlaIII	CATG	3 cut(s)	31, 244, 368
NruI	TCGCGA	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	308
PagI	TCATGA	1 cut(s)	240
PauI	GCGCGC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	185, 244, 358, 371
PinAI	ACCGGT	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	180, 333, 343
PleI	GAGTC	2 cut(s)	48, 65
PpsI	GAGTC	2 cut(s)	48, 65
PsuI	RGATCY	2 cut(s)	104, 135
PteI	GCGCGC	1 cut(s)	292
RruI	TCGCGA	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	179, 332, 342
Sau3AI	GATC	7 cut(s)	104, 126, 135, 147, 210, 237, 279
SchI	GAGTC	2 cut(s)	49, 65
SetI	ASST	6 cut(s)	37, 51, 64, 117, 123, 180
SfuI	TTCGAA	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	164
TaqI	TCGA	3 cut(s)	125, 150, 308
TfiI	GAWTC	4 cut(s)	185, 244, 358, 371
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	166, 220
TseI	GCWGC	3 cut(s)	178, 331, 341
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	166, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.