Rh5CG305700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002939
Physical Location & Seq
Reverse (-)
33687315 .. 33697919
10605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG305700.1

Sequence Viewer

Length: 441 bp
ATGAAACTTTTCAAGTCTGGACCTCCAGCTGTACCTATACACAGAACGTATAAGACTAAGGTGCCGATGGAGAATCACAAAAGTCGCGAGGAAGGAGATGGAGCTGTCTCAGACTCGGAGATGGCGCAGAGGGAAGAGTTCGAGATGAATGTGGCTGGATCTGAAGAGGCGGAGCTTTCGATCAGTCAGATCCATGGAAAGATTGACCGGTTCACTGAGATGATATCGGAGCTGCTTGATTCGGGGAAGGCGATGTTCAAGAAGATCAGTGATGAATATGAGGAGCGATTGATCATGATTCACAAGGAGCAAATGGAGAAATGGCAGGAGGAGATCAGAGAGTTGCGCGCGATTGATGTGAGGAGGCTAGTGCTTTGCTGCATAATGCTACATATTTGCTTCAGAATCGTCATGTTGATTCATGTTGTTTCCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

17.11

Weight (kDa)

6.09

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccII CGCG 3 cut(s) 87, 348, 350
AciI CCGC 1 cut(s) 170
AclWI GGATC 2 cut(s) 166, 184
AcuI CTGAAG 2 cut(s) 183, 385
AfaI GTAC 1 cut(s) 33
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 13, 259
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 4 cut(s) 29, 104, 175, 232
AluI AGCT 4 cut(s) 29, 104, 175, 232
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 166, 184
ApeKI GCWGC 2 cut(s) 232, 378
AsiGI ACCGGT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 127, 348, 350
AspS9I GGNCC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 219, 365
BccI CCATC 3 cut(s) 61, 92, 115
BciT130I CCWGG 1 cut(s) 433
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 368
BisI GCNGC 2 cut(s) 233, 379
BlsI GCNGC 2 cut(s) 234, 380
Bme1390I CCNGG 1 cut(s) 433
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 207
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 123, 207
BsePI GCGCGC 1 cut(s) 346
BseRI GAGGAG 3 cut(s) 296, 344, 376
BseXI GCAGC 2 cut(s) 219, 365
Bsh1236I CGCG 3 cut(s) 87, 348, 350
BshNI GGYRCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 112
Bsp143I GATC 6 cut(s) 158, 180, 189, 264, 291, 333
Bsp19I CCATGG 1 cut(s) 193
Bsp68I TCGCGA 1 cut(s) 87
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 122, 208
BspFNI CGCG 3 cut(s) 87, 348, 350
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 2 cut(s) 166, 184
BspT107I GGYRCC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 193
BssHII GCGCGC 1 cut(s) 346
BssMI GATC 6 cut(s) 158, 180, 189, 264, 291, 333
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 433
Bst6I CTCTTC 2 cut(s) 129, 159
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 57, 109, 216
BstDSI CCRYGG 1 cut(s) 193
BstFNI CGCG 3 cut(s) 87, 348, 350
BstHHI GCGC 3 cut(s) 127, 348, 350
BstKTI GATC 6 cut(s) 161, 183, 192, 267, 294, 336
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 6 cut(s) 158, 180, 189, 264, 291, 333
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 431
BstUI CGCG 3 cut(s) 87, 348, 350
BstV1I GCAGC 2 cut(s) 219, 365
BstX2I RGATCY 2 cut(s) 158, 189
BstYI RGATCY 2 cut(s) 158, 189
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 213, 274
BtuMI TCGCGA 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 294
CfoI GCGC 3 cut(s) 127, 348, 350
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 32
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 4 cut(s) 194, 295, 412, 422
CviJI RGCY 6 cut(s) 29, 104, 155, 175, 232, 367
CviKI_1 RGCY 6 cut(s) 29, 104, 155, 175, 232, 367
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 57, 109, 216
DpnI GATC 6 cut(s) 160, 182, 191, 266, 293, 335
DpnII GATC 6 cut(s) 158, 180, 189, 264, 291, 333
Eam1104I CTCTTC 2 cut(s) 129, 159
EarI CTCTTC 2 cut(s) 129, 159
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 193
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 183, 385
EcoRII CCWGG 1 cut(s) 431
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 4 cut(s) 197, 298, 415, 425
FaiI YATR 9 cut(s) 38, 51, 195, 279, 296, 383, 393, 413, 423
FatI CATG 4 cut(s) 193, 294, 411, 421
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 233, 379
Fsp4HI GCNGC 2 cut(s) 233, 379
FspBI CTAG 1 cut(s) 368
GlaI GCGC 3 cut(s) 126, 347, 349
GluI GCNGC 2 cut(s) 233, 379
GsuI CTGGAG 1 cut(s) 9
HapII CCGG 1 cut(s) 208
HhaI GCGC 3 cut(s) 127, 348, 350
Hin1II CATG 4 cut(s) 197, 298, 415, 425
Hin6I GCGC 3 cut(s) 125, 346, 348
HinP1I GCGC 3 cut(s) 125, 346, 348
HinfI GANTC 6 cut(s) 73, 113, 239, 298, 405, 418
HpaII CCGG 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 7 cut(s) 112, 118, 163, 189, 229, 338, 404
Hpy188III TCNNGA 5 cut(s) 18, 86, 142, 259, 295
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 86, 241
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 381
HpyF3I CTNAG 3 cut(s) 57, 109, 216
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 4 cut(s) 197, 298, 415, 425
HspAI GCGC 3 cut(s) 125, 346, 348
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 6 cut(s) 158, 180, 189, 264, 291, 333
LmnI GCTCC 5 cut(s) 101, 172, 229, 283, 307
LpnPI CCDG 6 cut(s) 3, 39, 141, 221, 311, 418
Lsp1109I GCAGC 2 cut(s) 219, 365
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 47
MalI GATC 6 cut(s) 160, 182, 191, 266, 293, 335
MboI GATC 6 cut(s) 158, 180, 189, 264, 291, 333
MboII GAAGA 3 cut(s) 146, 176, 274
MflI RGATCY 2 cut(s) 158, 189
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 8 cut(s) 33, 82, 123, 160, 274, 322, 354, 357
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 433
MvnI CGCG 3 cut(s) 87, 348, 350
NcoI CCATGG 1 cut(s) 193
NdeII GATC 6 cut(s) 158, 180, 189, 264, 291, 333
NlaIII CATG 4 cut(s) 197, 298, 415, 425
NlaIV GGNNCC 1 cut(s) 63
NruI TCGCGA 1 cut(s) 87
PagI TCATGA 1 cut(s) 294
PauI GCGCGC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 73, 239, 298, 405, 418
PfoI TCCNGGA 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 2 cut(s) 234, 380
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 158, 189
PteI GCGCGC 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 29
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 218
SatI GCNGC 2 cut(s) 233, 379
Sau3AI GATC 6 cut(s) 158, 180, 189, 264, 291, 333
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 433
SetI ASST 8 cut(s) 25, 31, 37, 50, 63, 106, 177, 234
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 218
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 141, 179
TfiI GAWTC 5 cut(s) 73, 239, 298, 405, 418
TscAI CASTG 2 cut(s) 220, 274
TseI GCWGC 2 cut(s) 232, 378
TspDTI ATGAA 4 cut(s) 17, 161, 288, 410
TspRI CASTG 2 cut(s) 220, 274
VpaK11BI GGWCC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.