Rh5CG016300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
1073618 .. 1073961
344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG016300.1

Sequence Viewer

Length: 258 bp
ATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTCGTTGAATTAGGCATAGATTTTTGTGCAGATAAGGTGTTTGATGAGATGCTTGTGAGAAATAGTAGTGACTGTGATAGTAGATTGAATCTGATTCACAAGGAGCAAATGGAGAAATGGCAGGAGGACATCAGAGAGTTGCGTGCGATTAATGCTTCGAATGAGGAGGCTAGTGCTGTGCTGCATAATGCTACATATTTGCTTCAGAATCCTCATGTTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.77

Weight (kDa)

4.9

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 38, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 211
AseI ATTAAT 1 cut(s) 180
AsuII TTCGAA 1 cut(s) 188
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 198
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmsI GCATC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 174
CviAII CATG 1 cut(s) 245
CviJI RGCY 2 cut(s) 6, 200
CviKI_1 RGCY 2 cut(s) 6, 200
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 47, 216, 226, 246
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 212
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 248
HinfI GANTC 4 cut(s) 118, 124, 238, 251
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 123, 164, 237
Hpy188III TCNNGA 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 59, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 248
LmnI GCTCC 2 cut(s) 11, 133
LpnPI CCDG 2 cut(s) 22, 137
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 38
MnlI CCTC 5 cut(s) 21, 148, 187, 190, 252
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 188
PfeI GAWTC 4 cut(s) 118, 124, 238, 251
PkrI GCNGC 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 8, 32, 69
SfaNI GCATC 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 188
SgeI CNNG 6 cut(s) 21, 95, 142, 164, 185, 213
Sse9I AATT 1 cut(s) 38
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 38
TfiI GAWTC 4 cut(s) 118, 124, 238, 251
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 180
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.