Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002939

Physical Location & Seq

Genomic Coordinates Forward (+)

65054110 .. 65054452

Gene Structure 343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAGCTCCGGCAAAAACTCCAAAGAGAGGATTCACAAGGAGGAAATGGAGAAATGGCAGGATGAGATCAGAGAGTTGCGCGCGATTGATGCTTCGAATGAGGAGGCTAGTGCTGTGCTGCATGATGCTACATATTTGTTTCAGAATCCTCATGTTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

54

Amino Acids

6.27

Weight (kDa)

4.98

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03050 AT5G03050
fragaria_vesca	FvH4_6g36280
malus_domestica	MD17G1156700.v1.1
prunus_persica	Prupe.3G028700_v2.0.a1 Prupe.3G028700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148291
rosa_laevigata	RLG00000020333
rosa_multiflora	Rmu_sc0002586.1_g000002 Rmu_sc0004032.1_g000014 Rmu_sc0006888.1_g000017 Rmu_sc0013350.1_g000016 Rmu_sc0015777.1_g000003 Rmu_sc0020359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00098940 Rroxscaffold_2G00129240 Rroxscaffold_3G00245520 Rroxscaffold_4G00297960 Rroxscaffold_4G00331090
rosa_rugosa	Rorug02G0405300 Rorug04G0114800 Rorug06G0390700
rosa_samantha	Rh1BG203400 Rh1DG153600 Rh1DG230400 Rh2AG464000 Rh2BG477000 Rh2CG450700 Rh2DG485800 Rh5AG015200 Rh5AG348400 Rh5CG016300 Rh5CG305700 Rh5DG523500 Rh6AG225300 Rh7DG482800
rosa_wichuraiana	Rw2G037820 Rw4G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	81, 83
AfiI	CCNNNNNNNGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	81, 83
AsuII	TTCGAA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmsI	GCATC	2 cut(s)	79, 115
Bpu14I	TTCGAA	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	27
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	81, 83
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	81, 83
BspT104I	TTCGAA	1 cut(s)	95
BssHII	GCGCGC	1 cut(s)	79
BssMI	GATC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	81, 83
BstHHI	GCGC	2 cut(s)	81, 83
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstUI	CGCG	2 cut(s)	81, 83
BstV1I	GCAGC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	81, 83
CviAII	CATG	2 cut(s)	122, 152
CviJI	RGCY	2 cut(s)	6, 107
CviKI_1	RGCY	2 cut(s)	6, 107
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	125, 155
FaiI	YATR	3 cut(s)	123, 133, 153
FatI	CATG	2 cut(s)	121, 151
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	80, 82
GluI	GCNGC	1 cut(s)	119
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	81, 83
Hin1II	CATG	2 cut(s)	125, 155
Hin6I	GCGC	2 cut(s)	79, 81
HinP1I	GCGC	2 cut(s)	79, 81
HinfI	GANTC	3 cut(s)	31, 145, 158
HpaII	CCGG	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	71, 144
Hpy188III	TCNNGA	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	125, 155
HspAI	GCGC	2 cut(s)	79, 81
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	22, 44
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	79, 115
MaeI	CTAG	1 cut(s)	108
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	8
MnlI	CCTC	5 cut(s)	21, 34, 94, 97, 159
MspI	CCGG	1 cut(s)	9
MvnI	CGCG	2 cut(s)	81, 83
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	125, 155
NspV	TTCGAA	1 cut(s)	95
PauI	GCGCGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	31, 145, 158
PkrI	GCNGC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	8
PteI	GCGCGC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	79, 115
SfuI	TTCGAA	1 cut(s)	95
SgeI	CNNG	7 cut(s)	21, 49, 71, 92, 94, 120, 134
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	8
TaqI	TCGA	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	31, 145, 158
TseI	GCWGC	1 cut(s)	118
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.