MD17G1156700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0002939
Physical Location & Seq
Forward (+)
15043240 .. 15045143
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1156700.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGAGAACGCAGAAAGTGAATCTACAAGGAAACGCATGAAACCAGATGAAGGAGAAGGAGTGATGATAGAATCAGAGATGGATCAGAAGGAAGAATTTGAGGGAATAGTTGCTGGATCTGAGGAGGTGGAGCTCGCAATCGCTCACATCCTCGAGAAGATTGAACGCTTCACTCAGCTGGTATCTGAGAGTCTGGAATCAGGGAAGACGATGTTTCAGAAGATTAGCGATGAGTTTGAAGAGCGAATGATTATGGTGCACAAGGAACAAATTGAGAAATGGCAGGAAGAGATCCGAGAGTTGCGTATGCTTGATGCTTCAAACGAGGACGCCAATGTTGTTCTGCATAATGCCCGACATGTATTTCAAAATGCTAACCTTGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.0

Weight (kDa)

4.54

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 90, 124, 286
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 4 cut(s) 164, 239, 321, 368
AluBI AGCT 2 cut(s) 133, 178
AluI AGCT 2 cut(s) 133, 178
Alw21I GWGCWC 2 cut(s) 135, 261
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 3 cut(s) 90, 124, 286
Ama87I CYCGRG 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 135, 261
BccI CCATC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 152
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 3 cut(s) 111, 177, 188
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 135, 261
BsiHKCI CYCGRG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 135, 261
Bsp143I GATC 3 cut(s) 82, 116, 291
BspCNI CTCAG 3 cut(s) 112, 178, 187
BspPI GGATC 3 cut(s) 90, 124, 286
BspQI GCTCTTC 1 cut(s) 234
BssMI GATC 3 cut(s) 82, 116, 291
BssNI GRCGYC 1 cut(s) 330
Bst6I CTCTTC 2 cut(s) 234, 282
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 120, 174, 186
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 3 cut(s) 85, 119, 294
BstMBI GATC 3 cut(s) 82, 116, 291
BstNSI RCATGY 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 116, 291
BstYI RGATCY 2 cut(s) 116, 291
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 135
CseI GACGC 1 cut(s) 338
CviAII CATG 2 cut(s) 37, 359
CviJI RGCY 2 cut(s) 133, 178
CviKI_1 RGCY 2 cut(s) 133, 178
DdeI CTNAG 3 cut(s) 120, 174, 186
DpnI GATC 3 cut(s) 84, 118, 293
DpnII GATC 3 cut(s) 82, 116, 291
Eam1104I CTCTTC 2 cut(s) 234, 282
EarI CTCTTC 2 cut(s) 234, 282
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 2 cut(s) 40, 362
FaiI YATR 5 cut(s) 38, 254, 308, 348, 360
FatI CATG 2 cut(s) 36, 358
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 135
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 40, 362
HinfI GANTC 5 cut(s) 20, 71, 190, 197, 383
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 6 cut(s) 76, 87, 121, 187, 219, 296
Hpy188III TCNNGA 3 cut(s) 154, 194, 387
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 44, 50, 82
HpyCH4V TGCA 2 cut(s) 259, 346
HpyF3I CTNAG 3 cut(s) 120, 174, 186
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 40, 362
Kzo9I GATC 3 cut(s) 82, 116, 291
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 57, 99, 164, 179, 186, 269
LweI GCATC 1 cut(s) 304
MalI GATC 3 cut(s) 84, 118, 293
MboI GATC 3 cut(s) 82, 116, 291
MboII GAAGA 6 cut(s) 104, 169, 217, 232, 251, 299
MflI RGATCY 2 cut(s) 116, 291
MhlI GDGCHC 2 cut(s) 135, 261
MluCI AATT 2 cut(s) 95, 270
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 94, 115, 118, 161, 319
MspA1I CMGCKG 1 cut(s) 178
NdeII GATC 3 cut(s) 82, 116, 291
NlaIII CATG 2 cut(s) 40, 362
NspI RCATGY 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 152
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 20, 71, 197, 383
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PscI ACATGT 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 135
PsuI RGATCY 2 cut(s) 116, 291
PvuII CAGCTG 1 cut(s) 178
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 82, 116, 291
SchI GAGTC 1 cut(s) 199
SduI GDGCHC 2 cut(s) 135, 261
SetI ASST 4 cut(s) 129, 135, 180, 381
SfaNI GCATC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 95, 270
SstI GAGCTC 1 cut(s) 135
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 95, 270
TfiI GAWTC 4 cut(s) 20, 71, 197, 383
TspDTI ATGAA 2 cut(s) 53, 63
VneI GTGCAC 1 cut(s) 257
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.