Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006888.1

Orthogroup ID

OG0002939

Physical Location & Seq

Genomic Coordinates Forward (+)

64884 .. 65227

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006888.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgagctccggcaaaaactccaaagagaggttcgttgaattaggcatagatttttgtgcagataaggtgtttgatgagatgcttgtgagaaatagtagtgactgtgattgtagattgaatctgattcacaaggaggaaatggagaaatggcaggatgagatcagagagttgcgcgcgattgatgcttcgaatgaggaggctagtgctgtgctgcatgatgctacatatttgtttcagaatcctcatgttgaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.84

Weight (kDa)

4.63

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03050 AT5G03050
fragaria_vesca	FvH4_6g36280
malus_domestica	MD17G1156700.v1.1
prunus_persica	Prupe.3G028700_v2.0.a1 Prupe.3G028700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148291
rosa_laevigata	RLG00000020333
rosa_multiflora	Rmu_sc0002586.1_g000002 Rmu_sc0004032.1_g000014 Rmu_sc0006888.1_g000017 Rmu_sc0013350.1_g000016 Rmu_sc0015777.1_g000003 Rmu_sc0020359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00098940 Rroxscaffold_2G00129240 Rroxscaffold_3G00245520 Rroxscaffold_4G00297960 Rroxscaffold_4G00331090
rosa_rugosa	Rorug02G0405300 Rorug04G0114800 Rorug06G0390700
rosa_samantha	Rh1BG203400 Rh1DG153600 Rh1DG230400 Rh2AG464000 Rh2BG477000 Rh2CG450700 Rh2DG485800 Rh5AG015200 Rh5AG348400 Rh5CG016300 Rh5CG305700 Rh5DG523500 Rh6AG225300 Rh7DG482800
rosa_wichuraiana	Rw2G037820 Rw4G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	174, 176
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	38, 118, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	174, 176
AsuII	TTCGAA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmsI	GCATC	3 cut(s)	69, 172, 208
Bpu14I	TTCGAA	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	27
BsePI	GCGCGC	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	174, 176
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	174, 176
BspT104I	TTCGAA	1 cut(s)	188
BssHII	GCGCGC	1 cut(s)	172
BssMI	GATC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	174, 176
BstHHI	GCGC	2 cut(s)	174, 176
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstUI	CGCG	2 cut(s)	174, 176
BstV1I	GCAGC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	174, 176
CviAII	CATG	2 cut(s)	215, 245
CviJI	RGCY	2 cut(s)	6, 200
CviKI_1	RGCY	2 cut(s)	6, 200
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	218, 248
FaiI	YATR	4 cut(s)	47, 216, 226, 246
FatI	CATG	2 cut(s)	214, 244
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	173, 175
GluI	GCNGC	1 cut(s)	212
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	174, 176
Hin1II	CATG	2 cut(s)	218, 248
Hin6I	GCGC	2 cut(s)	172, 174
HinP1I	GCGC	2 cut(s)	172, 174
HinfI	GANTC	4 cut(s)	118, 124, 238, 251
HpaII	CCGG	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	123, 164, 237
Hpy188III	TCNNGA	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	59, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	218, 248
HspAI	GCGC	2 cut(s)	172, 174
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	22, 137
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	3 cut(s)	69, 172, 208
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	5 cut(s)	21, 127, 187, 190, 252
MspI	CCGG	1 cut(s)	9
MvnI	CGCG	2 cut(s)	174, 176
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	218, 248
NmuCI	GTSAC	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	188
PauI	GCGCGC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	118, 124, 238, 251
PkrI	GCNGC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	8
PteI	GCGCGC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	8, 32, 69
SfaNI	GCATC	3 cut(s)	69, 172, 208
SfuI	TTCGAA	1 cut(s)	188
SgeI	CNNG	8 cut(s)	21, 95, 142, 164, 185, 187, 213, 227
Sse9I	AATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	38
TfiI	GAWTC	4 cut(s)	118, 124, 238, 251
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.