Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002939

Physical Location & Seq

Genomic Coordinates Forward (+)

63802178 .. 63802811

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAGCGAAGGAATTGAATCGAACAGAAAACGCATGAAGCCTGATAGTCGCGAGGAAGGAGACGGAGCTGTCTCAGACTCGGAGATGGCGCAGAGGGAAGAGTTCCAGATGAGTGTGGCTGGATCTGAAGAGGTGGAGCTTTCGATCAGTCAGATCCTTGGAAAGATTGACCGTTTCACTGAGATGATATCGGAGCTGCTTGATTCGGGGAAGGCGGTGTTCAAGAAGATCAGTGATGATTATGAGGAGCGATTGATTATGATTCACAAGGAGCAAATGGAGAAATGGCAGGAGGAGATCAGGGAGTTGCGCGCGATTGATGCTTCGAATGAGGAGGCTAGTGCTGTGCTGCATAATGCTACATATCTGCTTCAGAATCCTCATGTTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.11

Weight (kDa)

4.54

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03050 AT5G03050
fragaria_vesca	FvH4_6g36280
malus_domestica	MD17G1156700.v1.1
prunus_persica	Prupe.3G028700_v2.0.a1 Prupe.3G028700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0148291
rosa_laevigata	RLG00000020333
rosa_multiflora	Rmu_sc0002586.1_g000002 Rmu_sc0004032.1_g000014 Rmu_sc0006888.1_g000017 Rmu_sc0013350.1_g000016 Rmu_sc0015777.1_g000003 Rmu_sc0020359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00098940 Rroxscaffold_2G00129240 Rroxscaffold_3G00245520 Rroxscaffold_4G00297960 Rroxscaffold_4G00331090
rosa_rugosa	Rorug02G0405300 Rorug04G0114800 Rorug06G0390700
rosa_samantha	Rh1BG203400 Rh1DG153600 Rh1DG230400 Rh2AG464000 Rh2BG477000 Rh2CG450700 Rh2DG485800 Rh5AG015200 Rh5AG348400 Rh5CG016300 Rh5CG305700 Rh5DG523500 Rh6AG225300 Rh7DG482800
rosa_wichuraiana	Rw2G037820 Rw4G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccII	CGCG	3 cut(s)	54, 315, 317
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	133, 151
AcuI	CTGAAG	2 cut(s)	150, 359
AgsI	TTSAA	2 cut(s)	20, 226
AluBI	AGCT	3 cut(s)	71, 142, 199
AluI	AGCT	3 cut(s)	71, 142, 199
Alw26I	GTCTC	2 cut(s)	57, 79
AlwI	GGATC	2 cut(s)	133, 151
ApeKI	GCWGC	2 cut(s)	199, 352
AspLEI	GCGC	3 cut(s)	94, 315, 317
AsuII	TTCGAA	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	186, 339
BccI	CCATC	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	57, 79
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	200, 353
BlsI	GCNGC	2 cut(s)	201, 354
BmsI	GCATC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	90, 174
BsePI	GCGCGC	1 cut(s)	313
BseRI	GAGGAG	3 cut(s)	263, 311, 350
BseXI	GCAGC	2 cut(s)	186, 339
Bsh1236I	CGCG	3 cut(s)	54, 315, 317
BsmAI	GTCTC	2 cut(s)	57, 79
BsmBI	CGTCTC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	5 cut(s)	125, 147, 156, 231, 300
Bsp68I	TCGCGA	1 cut(s)	54
BspACI	CCGC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	89, 175
BspFNI	CGCG	3 cut(s)	54, 315, 317
BspPI	GGATC	2 cut(s)	133, 151
BspT104I	TTCGAA	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	160
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	5 cut(s)	125, 147, 156, 231, 300
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	96, 126
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	76, 183
BstFNI	CGCG	3 cut(s)	54, 315, 317
BstHHI	GCGC	3 cut(s)	94, 315, 317
BstKTI	GATC	5 cut(s)	128, 150, 159, 234, 303
BstMAI	GTCTC	2 cut(s)	57, 79
BstMBI	GATC	5 cut(s)	125, 147, 156, 231, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstUI	CGCG	3 cut(s)	54, 315, 317
BstV1I	GCAGC	2 cut(s)	186, 339
BstX2I	RGATCY	2 cut(s)	125, 156
BstYI	RGATCY	2 cut(s)	125, 156
BtsIMutI	CAGTG	2 cut(s)	180, 241
BtuMI	TCGCGA	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	3 cut(s)	94, 315, 317
CviAII	CATG	2 cut(s)	37, 386
CviJI	RGCY	6 cut(s)	43, 71, 122, 142, 199, 341
CviKI_1	RGCY	6 cut(s)	43, 71, 122, 142, 199, 341
DdeI	CTNAG	2 cut(s)	76, 183
DpnI	GATC	5 cut(s)	127, 149, 158, 233, 302
DpnII	GATC	5 cut(s)	125, 147, 156, 231, 300
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	96, 126
EarI	CTCTTC	2 cut(s)	96, 126
Eco130I	CCWWGG	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	150, 359
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	40, 389
FaiI	YATR	6 cut(s)	38, 246, 263, 357, 367, 387
FatI	CATG	2 cut(s)	36, 385
Fnu4HI	GCNGC	2 cut(s)	200, 353
Fsp4HI	GCNGC	2 cut(s)	200, 353
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	3 cut(s)	93, 314, 316
GluI	GCNGC	2 cut(s)	200, 353
HhaI	GCGC	3 cut(s)	94, 315, 317
Hin1II	CATG	2 cut(s)	40, 389
Hin6I	GCGC	3 cut(s)	92, 313, 315
HinP1I	GCGC	3 cut(s)	92, 313, 315
HinfI	GANTC	6 cut(s)	20, 80, 206, 265, 379, 392
Hpy188I	TCNGA	6 cut(s)	79, 85, 130, 156, 196, 378
Hpy188III	TCNNGA	4 cut(s)	53, 109, 226, 396
HpyAV	CCTTC	3 cut(s)	5, 53, 208
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	76, 183
Hsp92II	CATG	2 cut(s)	40, 389
HspAI	GCGC	3 cut(s)	92, 313, 315
Kzo9I	GATC	5 cut(s)	125, 147, 156, 231, 300
LmnI	GCTCC	5 cut(s)	68, 139, 196, 250, 274
LpnPI	CCDG	5 cut(s)	57, 108, 122, 278, 289
Lsp1109I	GCAGC	2 cut(s)	186, 339
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	342
MalI	GATC	5 cut(s)	127, 149, 158, 233, 302
MboI	GATC	5 cut(s)	125, 147, 156, 231, 300
MboII	GAAGA	3 cut(s)	113, 143, 241
MflI	RGATCY	2 cut(s)	125, 156
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	49, 90, 127, 241, 289, 328, 331, 393
MslI	CAYNNNNRTG	1 cut(s)	185
MvnI	CGCG	3 cut(s)	54, 315, 317
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	5 cut(s)	125, 147, 156, 231, 300
NlaIII	CATG	2 cut(s)	40, 389
NruI	TCGCGA	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	329
PauI	GCGCGC	1 cut(s)	313
PfeI	GAWTC	5 cut(s)	20, 206, 265, 379, 392
PkrI	GCNGC	2 cut(s)	201, 354
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	125, 156
PteI	GCGCGC	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	2 cut(s)	200, 353
Sau3AI	GATC	5 cut(s)	125, 147, 156, 231, 300
SchI	GAGTC	1 cut(s)	74
SetI	ASST	4 cut(s)	73, 138, 144, 201
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	23, 146, 329
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	5 cut(s)	20, 206, 265, 379, 392
TscAI	CASTG	2 cut(s)	187, 241
TseI	GCWGC	2 cut(s)	199, 352
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	187, 241
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.