Rroxscaffold_3G00245520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002939
Physical Location & Seq
Reverse (-)
38541365 .. 38549537
8173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245520.1

Sequence Viewer

Length: 294 bp
ATGTCTCGGTGTAGCAGGTTTGTGGCTCCCTACACTCCAGGGTACAACAACCTCGATCTTTGTAGGTGTACACTCACAATACTCGGATTTGTTTGGATACGAAACGAAGCAATCGATAAAGAATATGGCCGGAGGTTGCATGAATTTCAGGCCGAATTAGCTTCCTCCAATGAGCTCCGCAAAAACTCCAAAGAGAGGTTCGTTGAATTAGGCATAGATTTTTGTGCAGATAAGGTGTTTGATGAGATGCTTGTGAGAAATAGTAGTGACTGTGATTGTAGATTGAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.32

Weight (kDa)

5.8

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 6
AciI CCGC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 2 cut(s) 44, 70
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 206, 286
AjnI CCWGG 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 2 cut(s) 161, 175
AluI AGCT 2 cut(s) 161, 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 127, 150
ApoI RAATTY 1 cut(s) 143
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 6
BfuI GTATCC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 2 cut(s) 129, 152
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 129, 152
Bsp1286I GDGCHC 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 129, 152
BspDI ATCGAT 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 68
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 114
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 2 cut(s) 129, 152
BsuTUI ATCGAT 1 cut(s) 114
BveI ACCTGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 43, 69
CviAII CATG 1 cut(s) 140
CviJI RGCY 5 cut(s) 26, 129, 152, 161, 175
CviKI_1 RGCY 5 cut(s) 26, 129, 152, 161, 175
CviQI GTAC 2 cut(s) 43, 69
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 126, 141, 215
FatI CATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 129, 152
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 143
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 69, 71
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 69, 71
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 139, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 31, 180
LpnPI CCDG 4 cut(s) 24, 51, 134, 143
LweI GCATC 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 143, 155, 206
MnlI CCTC 4 cut(s) 62, 126, 175, 189
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 27
RsaI GTAC 2 cut(s) 44, 70
RsaNI GTAC 2 cut(s) 43, 69
SacI GAGCTC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 177
SetI ASST 8 cut(s) 20, 54, 68, 137, 163, 177, 200, 237
SfaNI GCATC 1 cut(s) 237
Sse9I AATT 3 cut(s) 143, 155, 206
SsiI CCGC 1 cut(s) 178
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 54, 114
TasI AATT 3 cut(s) 143, 155, 206
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 286
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.