Rorug06G0390700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002939
Physical Location & Seq
Reverse (-)
53532137 .. 53533691
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0390700.1

Sequence Viewer

Length: 924 bp
ATGGTTACTGTCAAAGATGCTGTGGGGTCTTTTGTTGCTTGGCCGAGGGATCTTATAGTTCAATCCCCTCCCGATGTTAAGAAGAAACAACCTGTGAAGGCTGGTAAGGGTTTGAAGAAGAGGAAAAGGGTAGTAGCCGTTGATGAAGAGGAGTTATTTATCGACTTCAAGAAGCTGCCGAAAGATTACCCTGCAGCGTGCAAGTGCTTGTGGTTGTGGGCAAAAGACAATTTGGCAAATGGGAAGACAATCTCCTTTCAGATGGAAGACAAAGTTTTTGGCATCAACAAAAAGCAATATGTGTTTAAGGCAGATATTCATGCCTTGTGTACCATGGGTGAATTGTCGGGTGGAGTGATCTGCATGTACATGCTCTACTTGCATGAAGTCTTGAAGAGAGCAAAGATGTCAGAGATGGTTGGCTTTGTGGACCCTTCACAGCTTGGCGCACTTGGATGTGGAAATCCAACAGAAAGATCACGCCATCTAGCAAATAGGTTCCAAAATGCAAAGAAAGGGCAGATTTTTATGTTGCCATATAATGCAGGCAAGCACTGGATGTTGACTGTTGTCAATCCGGATGAAGAAACAATCTACTTCATGGATCCTTTGAGGCGTCGACTAATAGGTGACGAATGGGAGACGGTTGTGGAGAATGGTATCAAAATTTACAATGCTCACAGGAATAGATCTAGCCGCAAATCAATATTGTGGCAAAACATGGCGGGTATTCCGGTGCAGCAAACTGACAAGGATTGTGCCATATTTATCATGCGGTTCATGAAAGAAATAGTTGAGGATAGGAATCTGGAATTTGCATCAAAATGGCAGCGGCGATCATCCAAGGAACTGGTTTACACCCAAAAGGATCTTGATGCTGTGAGGACAGAGTGGGCTAAGTTTGTCATGAAGTATCACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

35.54

Weight (kDa)

9.46

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 169 - 300 1.1e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 4 cut(s) 697, 725, 775, 832
AclWI GGATC 4 cut(s) 57, 599, 612, 876
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 2 cut(s) 666, 812
AcyI GRCGYC 1 cut(s) 616
AfaI GTAC 2 cut(s) 331, 368
AgsI TTSAA 4 cut(s) 62, 115, 169, 394
AluBI AGCT 2 cut(s) 175, 442
AluI AGCT 2 cut(s) 175, 442
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 4 cut(s) 57, 599, 612, 876
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 4 cut(s) 175, 194, 739, 829
ApoI RAATTY 2 cut(s) 666, 812
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 350, 641
AvaII GGWCC 1 cut(s) 430
BamHI GGATCC 1 cut(s) 604
BbsI GAAGAC 2 cut(s) 251, 273
BbvI GCAGC 4 cut(s) 162, 206, 751, 841
BccI CCATC 3 cut(s) 256, 409, 492
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 2 cut(s) 488, 693
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 689
BisI GCNGC 6 cut(s) 176, 195, 697, 740, 830, 833
BlsI GCNGC 6 cut(s) 177, 196, 698, 741, 831, 834
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 432, 500, 606
BmsI GCATC 4 cut(s) 7, 291, 827, 865
BoxI GACNNNNGTC 1 cut(s) 569
BpiI GAAGAC 2 cut(s) 251, 273
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 44, 333, 843
BsaWI WCCGGW 2 cut(s) 577, 733
Bse1I ACTGG 2 cut(s) 560, 855
Bse8I GATNNNNATC 1 cut(s) 804
BseAI TCCGGA 1 cut(s) 577
BseDI CCNNGG 3 cut(s) 44, 333, 843
BseGI GGATG 4 cut(s) 461, 564, 586, 839
BseJI GATNNNNATC 1 cut(s) 804
BseNI ACTGG 2 cut(s) 560, 855
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 4 cut(s) 162, 206, 751, 841
BsgI GTGCAG 1 cut(s) 758
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 578, 734
BsmAI GTCTC 1 cut(s) 635
BsmBI CGTCTC 1 cut(s) 635
BsnI GGCC 1 cut(s) 43
Bsp13I TCCGGA 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 4 cut(s) 697, 725, 775, 832
BspANI GGCC 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 577
BspHI TCATGA 2 cut(s) 780, 906
BspLI GGNNCC 3 cut(s) 432, 500, 606
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 4 cut(s) 57, 599, 612, 876
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 2 cut(s) 560, 855
BssECI CCNNGG 3 cut(s) 44, 333, 843
BssMI GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
BssNI GRCGYC 1 cut(s) 616
BssT1I CCWWGG 2 cut(s) 333, 843
Bst4CI ACNGT 3 cut(s) 10, 568, 646
Bst6I CTCTTC 3 cut(s) 113, 141, 389
BstACI GRCGYC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 199, 547, 551
BstDEI CTNAG 1 cut(s) 897
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 4 cut(s) 461, 564, 586, 839
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 7 cut(s) 52, 360, 479, 607, 692, 839, 871
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNSI RCATGY 2 cut(s) 367, 373
BstPAI GACNNNNGTC 1 cut(s) 569
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 162, 206, 751, 841
BstV2I GAAGAC 2 cut(s) 251, 273
BstX2I RGATCY 4 cut(s) 49, 604, 689, 868
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 4 cut(s) 49, 604, 689, 868
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 4 cut(s) 461, 564, 586, 839
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 199, 547, 551
CciI TCATGA 2 cut(s) 780, 906
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 605
Csp6I GTAC 2 cut(s) 330, 367
CviJI RGCY 8 cut(s) 43, 101, 137, 175, 423, 442, 696, 896
CviKI_1 RGCY 8 cut(s) 43, 101, 137, 175, 423, 442, 696, 896
CviQI GTAC 2 cut(s) 330, 367
DdeI CTNAG 1 cut(s) 897
DpnI GATC 7 cut(s) 51, 359, 478, 606, 691, 838, 870
DpnII GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 113, 141, 389
EarI CTCTTC 3 cut(s) 113, 141, 389
Eco130I CCWWGG 2 cut(s) 333, 843
Eco47I GGWCC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 333, 843
ErhI CCWWGG 2 cut(s) 333, 843
Esp3I CGTCTC 1 cut(s) 635
FauI CCCGC 1 cut(s) 718
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 6 cut(s) 176, 195, 697, 740, 830, 833
FokI GGATG 4 cut(s) 468, 571, 593, 826
Fsp4HI GCNGC 6 cut(s) 176, 195, 697, 740, 830, 833
FspBI CTAG 2 cut(s) 488, 693
GlaI GCGC 1 cut(s) 448
GluI GCNGC 6 cut(s) 176, 195, 697, 740, 830, 833
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 578, 734
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 616
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HincII GTYRAC 2 cut(s) 564, 620
HindII GTYRAC 2 cut(s) 564, 620
HinfI GANTC 1 cut(s) 805
HpaII CCGG 2 cut(s) 578, 734
HphI GGTGA 2 cut(s) 350, 641
Hpy166II GTNNAC 5 cut(s) 330, 430, 564, 620, 856
Hpy188I TCNGA 2 cut(s) 261, 412
Hpy188III TCNNGA 8 cut(s) 71, 169, 391, 578, 781, 809, 872, 907
Hpy8I GTNNAC 5 cut(s) 330, 430, 564, 620, 856
Hpy99I CGWCG 1 cut(s) 621
HpyAV CCTTC 2 cut(s) 91, 444
HpyCH4III ACNGT 3 cut(s) 10, 568, 646
HpyCH4V TGCA 8 cut(s) 194, 201, 363, 382, 509, 545, 739, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 1 cut(s) 897
Hsp92I GRCGYC 1 cut(s) 616
HspAI GCGC 1 cut(s) 447
Kpn2I TCCGGA 1 cut(s) 577
Kzo9I GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
Lsp1109I GCAGC 4 cut(s) 162, 206, 751, 841
LweI GCATC 4 cut(s) 7, 291, 827, 865
MaeI CTAG 2 cut(s) 488, 693
MaeIII GTNAC 2 cut(s) 4, 629
MalI GATC 7 cut(s) 51, 359, 478, 606, 691, 838, 870
MboI GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
MboII GAAGA 8 cut(s) 94, 127, 130, 158, 256, 278, 406, 596
MflI RGATCY 4 cut(s) 49, 604, 689, 868
MluCI AATT 4 cut(s) 229, 341, 666, 812
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 7 cut(s) 39, 78, 114, 142, 606, 790, 876
MroI TCCGGA 1 cut(s) 577
MseI TTAA 2 cut(s) 78, 306
MslI CAYNNNNRTG 3 cut(s) 368, 454, 823
MspA1I CMGCKG 1 cut(s) 832
MspI CCGG 2 cut(s) 578, 734
MwoI GCNNNNNNNGC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 333
NdeII GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
NlaIV GGNNCC 3 cut(s) 432, 500, 606
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 2 cut(s) 367, 373
PagI TCATGA 2 cut(s) 780, 906
PfeI GAWTC 1 cut(s) 805
PkrI GCNGC 6 cut(s) 177, 196, 698, 741, 831, 834
PshAI GACNNNNGTC 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 432, 500, 606
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 4 cut(s) 49, 604, 689, 868
RsaI GTAC 2 cut(s) 331, 368
RsaNI GTAC 2 cut(s) 330, 367
RseI CAYNNNNRTG 3 cut(s) 368, 454, 823
SalI GTCGAC 1 cut(s) 618
SaqAI TTAA 2 cut(s) 78, 306
SatI GCNGC 6 cut(s) 176, 195, 697, 740, 830, 833
Sau3AI GATC 7 cut(s) 49, 357, 476, 604, 689, 836, 868
Sau96I GGNCC 1 cut(s) 430
SetI ASST 5 cut(s) 94, 177, 444, 500, 631
SfaNI GCATC 4 cut(s) 7, 291, 827, 865
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 368, 454, 823
Sse9I AATT 4 cut(s) 229, 341, 666, 812
SsiI CCGC 4 cut(s) 697, 725, 775, 832
SspI AATATT 1 cut(s) 708
SspMI CTAG 2 cut(s) 488, 693
StyI CCWWGG 2 cut(s) 333, 843
TaaI ACNGT 3 cut(s) 10, 568, 646
TaqI TCGA 2 cut(s) 162, 619
TasI AATT 4 cut(s) 229, 341, 666, 812
TatI WGTACW 1 cut(s) 366
TauI GCSGC 2 cut(s) 699, 835
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 2 cut(s) 78, 306
Tru9I TTAA 2 cut(s) 78, 306
TscAI CASTG 1 cut(s) 560
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 4 cut(s) 175, 194, 739, 829
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 8 cut(s) 159, 308, 399, 589, 597, 769, 797, 923
TspRI CASTG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 666, 812
XceI RCATGY 2 cut(s) 367, 373
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 2 cut(s) 488, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.