Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

20339504 .. 20341176

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGTCGAACTCGCTTATGAGCTGTGGCATAGCCGCCGTGTACCCTTCGCTTCTCTCTTCTTCCAAGTCTAAATTCGTATCCGCCGGAGTTCCACTCCCAAACGCCGGGAATGTTGGTCGTATCAGAATGGCTGCTCACTGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCTGGGATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTTAAGGCTCAGGAATGGGCAGCACTACCAGGGGGTCAAGCCACTTACTTGGGAAACCCAGTCCCGTGGGGTACTTTGCCCACAATCTTGGCCATTGAGTTCTTAGCCATTGCATTTGTTGAGCACCAGAGAAGTATGGAGAAAGACCCTGAGAAGAAGAAGTACCCGGGAGGCGCATTTGACCCTCTTGGATACTCGAAGGACCCCAAGAAGCTCGAGGAATTGAAAGTTAAAGAGATCAAGAACGGGCGGCTTGCGCTGTTGGCGTTTGTAGGATTCTGTGTGCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAACTTGGCAACTCACTTGGCGGATCCATGGCACAACAACATTGGCGATATTGTTATCCCTTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

241

Amino Acids

26.0

Weight (kDa)

6.22

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	55 - 151	8e-24	Chlorophyll A-B binding protein
Chloroa_b-bind	PF00504	152 - 175	1.6e-06	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	4 cut(s)	36, 84, 586, 677
AclWI	GGATC	2 cut(s)	674, 687
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	44, 309, 409, 500
AfiI	CCNNNNNNNGG	2 cut(s)	107, 644
AgsI	TTSAA	2 cut(s)	562, 721
AjnI	CCWGG	4 cut(s)	148, 187, 295, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	24, 167, 262, 550
AluI	AGCT	4 cut(s)	24, 167, 262, 550
Alw21I	GWGCWC	2 cut(s)	264, 462
AlwI	GGATC	2 cut(s)	674, 687
Ama87I	CYCGRG	3 cut(s)	502, 551, 637
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	134, 356
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	512, 595
AspS9I	GGNCC	2 cut(s)	538, 647
AsuC2I	CCSGG	5 cut(s)	109, 503, 504, 638, 639
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	3 cut(s)	502, 551, 637
AvaII	GGWCC	2 cut(s)	538, 647
BalI	TGGCCA	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
Bbv12I	GWGCWC	2 cut(s)	264, 462
BbvI	GCAGC	2 cut(s)	121, 368
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	4 cut(s)	150, 189, 297, 366
BciVI	GTATCC	2 cut(s)	91, 521
BcnI	CCSGG	5 cut(s)	109, 503, 504, 638, 639
BfmI	CTRYAG	1 cut(s)	271
BfuI	GTATCC	2 cut(s)	91, 521
BisI	GCNGC	4 cut(s)	36, 135, 357, 587
BlsI	GCNGC	4 cut(s)	37, 136, 358, 588
Bme1390I	CCNGG	9 cut(s)	109, 150, 189, 297, 366, 503, 504, 638, 639
Bme18I	GGWCC	2 cut(s)	538, 647
BmeT110I	CYCGRG	3 cut(s)	502, 551, 637
BmgT120I	GGNCC	2 cut(s)	538, 647
BmiI	GGNNCC	3 cut(s)	309, 540, 681
BmrFI	CCNGG	9 cut(s)	109, 150, 189, 297, 366, 503, 504, 638, 639
BmrI	ACTGGG	2 cut(s)	343, 389
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	2 cut(s)	343, 389
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	5 cut(s)	109, 503, 504, 638, 639
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	7 cut(s)	296, 365, 401, 502, 637, 638, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 644
Bse1I	ACTGG	3 cut(s)	146, 338, 395
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	4 cut(s)	150, 189, 297, 366
BseDI	CCNNGG	7 cut(s)	296, 365, 401, 502, 637, 638, 683
BseGI	GGATG	2 cut(s)	150, 264
BseLI	CCNNNNNNNGG	2 cut(s)	107, 644
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	359, 477
BseNI	ACTGG	3 cut(s)	146, 338, 395
BseXI	GCAGC	2 cut(s)	121, 368
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	264, 462
BsiHKCI	CYCGRG	3 cut(s)	502, 551, 637
BsiSI	CCGG	4 cut(s)	87, 108, 503, 638
BslFI	GGGAC	2 cut(s)	383, 655
BslI	CCNNNNNNNGG	2 cut(s)	107, 644
BsmFI	GGGAC	2 cut(s)	383, 655
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	3 cut(s)	502, 551, 637
Bsp1286I	GDGCHC	2 cut(s)	264, 462
Bsp143I	GATC	2 cut(s)	573, 679
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	4 cut(s)	36, 84, 586, 677
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	358, 478
BspLI	GGNNCC	3 cut(s)	309, 540, 681
BspPI	GGATC	2 cut(s)	674, 687
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	3 cut(s)	146, 338, 395
BssECI	CCNNGG	7 cut(s)	296, 365, 401, 502, 637, 638, 683
BssMI	GATC	2 cut(s)	573, 679
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	683
Bst2UI	CCWGG	4 cut(s)	150, 189, 297, 366
Bst4CI	ACNGT	3 cut(s)	179, 272, 627
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	155, 288, 591
BstDEI	CTNAG	3 cut(s)	345, 439, 486
BstDSI	CCRYGG	2 cut(s)	401, 683
BstF5I	GGATG	2 cut(s)	150, 264
BstHHI	GCGC	2 cut(s)	512, 595
BstKTI	GATC	2 cut(s)	576, 682
BstMBI	GATC	2 cut(s)	573, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 287, 592, 599
BstNI	CCWGG	4 cut(s)	150, 189, 297, 366
BstSCI	CCNGG	9 cut(s)	107, 148, 187, 295, 364, 501, 502, 636, 637
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	121, 368
BstX2I	RGATCY	1 cut(s)	679
BstXI	CCANNNNNNTGG	3 cut(s)	385, 402, 424
BstYI	RGATCY	1 cut(s)	679
BsuI	GTATCC	2 cut(s)	91, 521
BsuRI	GGCC	1 cut(s)	428
BtgI	CCRYGG	2 cut(s)	401, 683
BtsCI	GGATG	2 cut(s)	150, 264
BtsIMutI	CAGTG	2 cut(s)	139, 268
Cac8I	GCNNGC	3 cut(s)	155, 288, 591
CfoI	GCGC	2 cut(s)	512, 595
Cfr13I	GGNCC	2 cut(s)	538, 647
Cfr9I	CCCGGG	2 cut(s)	502, 637
Csp6I	GTAC	4 cut(s)	43, 308, 408, 499
CviAII	CATG	1 cut(s)	684
CviQI	GTAC	4 cut(s)	43, 308, 408, 499
DdeI	CTNAG	3 cut(s)	345, 439, 486
DpnI	GATC	2 cut(s)	575, 681
DpnII	GATC	2 cut(s)	573, 679
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	2 cut(s)	73, 692
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	683
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	538, 647
Eco53kI	GAGCTC	1 cut(s)	262
Eco88I	CYCGRG	3 cut(s)	502, 551, 637
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	4 cut(s)	148, 187, 295, 364
EcoT14I	CCWWGG	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	1 cut(s)	687
FaiI	YATR	6 cut(s)	20, 32, 284, 327, 473, 685
FaqI	GGGAC	2 cut(s)	383, 655
FatI	CATG	1 cut(s)	683
Fnu4HI	GCNGC	4 cut(s)	36, 135, 357, 587
FokI	GGATG	2 cut(s)	157, 251
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	4 cut(s)	36, 135, 357, 587
GlaI	GCGC	2 cut(s)	511, 594
GluI	GCNGC	4 cut(s)	36, 135, 357, 587
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	4 cut(s)	87, 108, 503, 638
HhaI	GCGC	2 cut(s)	512, 595
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	687
Hin6I	GCGC	2 cut(s)	510, 593
HinP1I	GCGC	2 cut(s)	510, 593
HinfI	GANTC	2 cut(s)	254, 612
HpaII	CCGG	4 cut(s)	87, 108, 503, 638
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	128, 259
Hpy188III	TCNNGA	2 cut(s)	347, 577
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	57, 529
HpyCH4III	ACNGT	3 cut(s)	179, 272, 627
HpyCH4V	TGCA	2 cut(s)	449, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 287, 592, 599
HpyF3I	CTNAG	3 cut(s)	345, 439, 486
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	687
HspAI	GCGC	2 cut(s)	510, 593
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	573, 679
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	121, 368
LweI	GCATC	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	575, 681
MboI	GATC	2 cut(s)	573, 679
MboII	GAAGA	4 cut(s)	51, 54, 502, 505
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	264, 462
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	74, 557
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	500, 531, 547
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	339, 567
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	4 cut(s)	87, 108, 503, 638
MspR9I	CCNGG	9 cut(s)	109, 150, 189, 297, 366, 503, 504, 638, 639
MvaI	CCWGG	4 cut(s)	150, 189, 297, 366
MwoI	GCNNNNNNNGC	4 cut(s)	154, 287, 592, 599
NciI	CCSGG	5 cut(s)	109, 503, 504, 638, 639
NcoI	CCATGG	1 cut(s)	683
NdeII	GATC	2 cut(s)	573, 679
NlaIII	CATG	1 cut(s)	687
NlaIV	GGNNCC	3 cut(s)	309, 540, 681
NmuCI	GTSAC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	37, 136, 358, 588
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	4 cut(s)	148, 187, 295, 364
PspGI	CCWGG	4 cut(s)	148, 187, 295, 364
PspN4I	GGNNCC	3 cut(s)	309, 540, 681
PspPI	GGNCC	2 cut(s)	538, 647
PspPPI	RGGWCCY	1 cut(s)	538
PspXI	VCTCGAGB	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	4 cut(s)	44, 309, 409, 500
RsaNI	GTAC	4 cut(s)	43, 308, 408, 499
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	339, 567
SatI	GCNGC	4 cut(s)	36, 135, 357, 587
Sau3AI	GATC	2 cut(s)	573, 679
Sau96I	GGNCC	2 cut(s)	538, 647
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	9 cut(s)	109, 150, 189, 297, 366, 503, 504, 638, 639
SduI	GDGCHC	2 cut(s)	264, 462
SetI	ASST	6 cut(s)	26, 169, 174, 240, 264, 552
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	538, 647
SlaI	CTCGAG	1 cut(s)	551
SmaI	CCCGGG	2 cut(s)	504, 639
SmlI	CTYRAG	2 cut(s)	239, 551
SmoI	CTYRAG	2 cut(s)	239, 551
Sse9I	AATT	2 cut(s)	74, 557
SsiI	CCGC	4 cut(s)	36, 84, 586, 677
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	9 cut(s)	107, 148, 187, 295, 364, 501, 502, 636, 637
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	179, 272, 627
TaqI	TCGA	3 cut(s)	8, 533, 552
TasI	AATT	2 cut(s)	74, 557
TauI	GCSGC	2 cut(s)	38, 589
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	2 cut(s)	339, 567
Tru9I	TTAA	2 cut(s)	339, 567
TscAI	CASTG	2 cut(s)	146, 275
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	134, 356
Tsp45I	GTSAC	1 cut(s)	191
TspMI	CCCGGG	2 cut(s)	502, 637
TspRI	CASTG	2 cut(s)	146, 275
VpaK11BI	GGWCC	2 cut(s)	538, 647
XapI	RAATTY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	551
XmaI	CCCGGG	2 cut(s)	502, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.