Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Forward (+)

13262317 .. 13264740

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATTGCCACCACAGCCTTCCCTTCAGTCCTATCTTCCTCCAAGTCTAAATTCGCCACTGCAGTCCAGCTCCCTAGTGTTGGTGTCAATGCCTCCTCCAGGTTCTCCATGTCAGCAGACTGGATGCCCGGCCAGCCCCGGCCTCCTTATCTTGATGGATCAGCTCCAGGTGACTTTGGATTTGACCCGCTTAGACTAGGAGAAGTACCAGAGAACTTAGAGAGGTTCAAGGAATCTGAACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATTCTAGTACCAGAAGCATTGGGTTTGGGGAACTGGGTAAAGGCACAAGAATGGGCAGCAATTCCAGGAGGCCAAGCCACTTACCTAGGCAATCCAGTTCCATGGGGGACTTTGCCTACAATATTGGTCATCGAGTTCCTCTCCATTGCTTTCGTAGAGCACCAACGCAGCATGGAAAAGGACCCGGAGAAGAAGAAGTACCCCGGTGGAGCTTTTGACCCCTTGGGTTACTCCAAGGACCCTAAGAAGTTCGAGGAATACAAAGTCAAAGAGGTCAAAAATGGTCGGCTCGCATTGTTGGCTTTCGTGGGATTCGTAGTTCAACAATCGGCGTACCCTGGCACCGGACCATTGGAGAATTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTCATTATCCCCAAAGGGATTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

246

Amino Acids

26.66

Weight (kDa)

6.11

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	57 - 211	3e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	647
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	77, 664
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	4 cut(s)	234, 315, 506, 641
AfiI	CCNNNNNNNGG	3 cut(s)	107, 126, 650
AgsI	TTSAA	2 cut(s)	256, 629
AjnI	CCWGG	5 cut(s)	125, 193, 301, 370, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	4 cut(s)	24, 97, 191, 518
AluI	AGCT	4 cut(s)	24, 97, 191, 518
Alw21I	GWGCWC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	3 cut(s)	157, 167, 376
ApeKI	GCWGC	2 cut(s)	362, 474
ApoI	RAATTY	2 cut(s)	77, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	487, 544, 653
AsuC2I	CCSGG	4 cut(s)	156, 166, 491, 510
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	487, 544, 653
AvrII	CCTAGG	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	374, 486
BccI	CCATC	2 cut(s)	176, 276
BciT130I	CCWGG	5 cut(s)	127, 195, 303, 372, 645
BcnI	CCSGG	4 cut(s)	156, 166, 491, 510
BfaI	CTAG	4 cut(s)	102, 224, 311, 392
BfmI	CTRYAG	2 cut(s)	87, 277
BisI	GCNGC	2 cut(s)	363, 475
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	2 cut(s)	364, 476
Bme1390I	CCNGG	9 cut(s)	127, 156, 166, 195, 303, 372, 491, 510, 645
Bme18I	GGWCC	3 cut(s)	487, 544, 653
BmgT120I	GGNCC	3 cut(s)	487, 544, 653
BmiI	GGNNCC	3 cut(s)	489, 546, 649
BmrFI	CCNGG	9 cut(s)	127, 156, 166, 195, 303, 372, 491, 510, 645
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	109, 177
BpuMI	CCSGG	4 cut(s)	156, 166, 491, 510
BsaJI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 126, 650
Bse1I	ACTGG	3 cut(s)	152, 344, 401
Bse3DI	GCAATG	2 cut(s)	30, 450
BseBI	CCWGG	5 cut(s)	127, 195, 303, 372, 645
BseDI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BseGI	GGATG	2 cut(s)	156, 715
BseLI	CCNNNNNNNGG	3 cut(s)	107, 126, 650
BseMI	GCAATG	2 cut(s)	30, 450
BseNI	ACTGG	3 cut(s)	152, 344, 401
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	374, 486
BshFI	GGCC	3 cut(s)	159, 169, 378
BshNI	GGYRCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	5 cut(s)	156, 166, 491, 510, 651
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	107, 126, 650
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	159, 169, 378
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	185
Bsp19I	CCATGG	2 cut(s)	407, 689
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	159, 169, 378
BspLI	GGNNCC	3 cut(s)	489, 546, 649
BspMAI	CTGCAG	2 cut(s)	91, 281
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	30, 450
BsrI	ACTGG	3 cut(s)	152, 344, 401
BssECI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
Bst2UI	CCWGG	5 cut(s)	127, 195, 303, 372, 645
BstC8I	GCNNGC	3 cut(s)	161, 294, 597
BstDEI	CTNAG	3 cut(s)	218, 244, 549
BstDSI	CCRYGG	2 cut(s)	407, 689
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	156, 715
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
BstNI	CCWGG	5 cut(s)	127, 195, 303, 372, 645
BstSCI	CCNGG	9 cut(s)	125, 154, 164, 193, 301, 370, 489, 508, 643
BstSFI	CTRYAG	2 cut(s)	87, 277
BstV1I	GCAGC	2 cut(s)	374, 486
BstXI	CCANNNNNNTGG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	159, 169, 378
BtgI	CCRYGG	2 cut(s)	407, 689
BtsCI	GGATG	2 cut(s)	156, 715
BtsI	GCAGTG	2 cut(s)	84, 274
BtsIMutI	CAGTG	2 cut(s)	84, 274
Cac8I	GCNNGC	3 cut(s)	161, 294, 597
Cfr13I	GGNCC	3 cut(s)	487, 544, 653
Csp6I	GTAC	4 cut(s)	233, 314, 505, 640
CviAII	CATG	4 cut(s)	136, 408, 478, 690
CviQI	GTAC	4 cut(s)	233, 314, 505, 640
DdeI	CTNAG	3 cut(s)	218, 244, 549
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
Eco47I	GGWCC	3 cut(s)	487, 544, 653
Eco57I	CTGAAG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	2 cut(s)	487, 544
EcoRII	CCWGG	5 cut(s)	125, 193, 301, 370, 643
EcoT14I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
ErhI	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
FaeI	CATG	4 cut(s)	139, 411, 481, 693
FaiI	YATR	5 cut(s)	137, 290, 409, 479, 691
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	135, 407, 477, 689
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	363, 475
FokI	GGATG	2 cut(s)	163, 722
Fsp4HI	GCNGC	2 cut(s)	363, 475
FspBI	CTAG	4 cut(s)	102, 224, 311, 392
GluI	GCNGC	2 cut(s)	363, 475
GsuI	CTGGAG	2 cut(s)	109, 177
HaeIII	GGCC	3 cut(s)	159, 169, 378
HapII	CCGG	5 cut(s)	156, 166, 491, 510, 651
Hin1II	CATG	4 cut(s)	139, 411, 481, 693
HinfI	GANTC	3 cut(s)	260, 307, 618
HpaII	CCGG	5 cut(s)	156, 166, 491, 510, 651
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	55, 60
HpyCH4V	TGCA	2 cut(s)	89, 279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
HpyF3I	CTNAG	3 cut(s)	218, 244, 549
Hsp92II	CATG	4 cut(s)	139, 411, 481, 693
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	102, 196, 515
Lsp1109I	GCAGC	2 cut(s)	374, 486
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	4 cut(s)	102, 224, 311, 392
MaeIII	GTNAC	2 cut(s)	197, 533
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	54, 508, 511
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	3 cut(s)	77, 366, 664
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	76, 130, 133, 180, 243, 368, 455, 553, 571
MroXI	GAANNNNTTC	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	17, 355
MspI	CCGG	5 cut(s)	156, 166, 491, 510, 651
MspR9I	CCNGG	9 cut(s)	127, 156, 166, 195, 303, 372, 491, 510, 645
MvaI	CCWGG	5 cut(s)	127, 195, 303, 372, 645
MwoI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
NciI	CCSGG	4 cut(s)	156, 166, 491, 510
NcoI	CCATGG	2 cut(s)	407, 689
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	139, 411, 481, 693
NlaIV	GGNNCC	3 cut(s)	489, 546, 649
NmuCI	GTSAC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	260, 307, 618
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	364, 476
PpuMI	RGGWCCY	2 cut(s)	487, 544
Psp5II	RGGWCCY	2 cut(s)	487, 544
Psp6I	CCWGG	5 cut(s)	125, 193, 301, 370, 643
PspGI	CCWGG	5 cut(s)	125, 193, 301, 370, 643
PspN4I	GGNNCC	3 cut(s)	489, 546, 649
PspPI	GGNCC	3 cut(s)	487, 544, 653
PspPPI	RGGWCCY	2 cut(s)	487, 544
PstI	CTGCAG	2 cut(s)	91, 281
RsaI	GTAC	4 cut(s)	234, 315, 506, 641
RsaNI	GTAC	4 cut(s)	233, 314, 505, 640
RseI	CAYNNNNRTG	2 cut(s)	17, 355
SatI	GCNGC	2 cut(s)	363, 475
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	3 cut(s)	487, 544, 653
ScrFI	CCNGG	9 cut(s)	127, 156, 166, 195, 303, 372, 491, 510, 645
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	9 cut(s)	26, 99, 131, 193, 199, 254, 393, 520, 582
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	2 cut(s)	87, 277
SinI	GGWCC	3 cut(s)	487, 544, 653
SmiMI	CAYNNNNRTG	2 cut(s)	17, 355
Sse9I	AATT	3 cut(s)	77, 366, 664
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	4 cut(s)	102, 224, 311, 392
StyD4I	CCNGG	9 cut(s)	125, 154, 164, 193, 301, 370, 489, 508, 643
StyI	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
TaqI	TCGA	2 cut(s)	438, 558
TasI	AATT	3 cut(s)	77, 366, 664
TfiI	GAWTC	3 cut(s)	260, 307, 618
TscAI	CASTG	2 cut(s)	91, 281
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	362, 474
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	91, 281
VpaK11BI	GGWCC	3 cut(s)	487, 544, 653
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	77, 664
XmaJI	CCTAGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	4 cut(s)	102, 224, 311, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.