Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

16227959 .. 16230209

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19750.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATTGCCACCACAGCCTTCCCTTCAGTCCTATCTTCCTCCAAGTCTAAATTCGCCACTGCAGTCCAGCTCCCTAGTGTTGGCGCCAATGCTTCCTCCAGGTTCTCCATGTCAGCGGAGTGGATGCCTGGCCAGCCCCGGCCTCCTTACCTCGATGGATCCGCTCCAGGTGACTTTGGATTTGACCCGCTTAGACTAGGAGAAGTACCAGAGAACTTGGAGAGGTTCAAGGAATCTGAACTGATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATTCTAGTACCAGAAGCATTGGGGTTAGGCAACTGGGTAAAGGCACAAGAATGGGCAGCACTTCCAGGAGGCCAAGCAACTTACCTAGGCAATCCAGTTCCATGGGGAACTTTGCCTACAATTTTGGTCATCGAGTTCCTCTCCATTGCCTTCGTAGAGCATCAACGTAGCATGGAAAAGGATCCGGAGAAGAAGAAGTACCCTGGTGGAGCTTTCGACCCCTTGGGATACTCCAAGGACCCAAAGAAGTTCGAGGAATACAAAGTCAAAGAGGTCAAAAATGGTCGGCTTGCATTGTTGGCTTTTGTTGGATTCGTAGTTCAACAATCGGCGTACCCCGGCACCGGACCGTTGGAGAATTTGGCCACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACATCATTATCCCCAAAGGGCTTTTGCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

248

Amino Acids

26.78

Weight (kDa)

6.11

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	11 - 156	8.6e-42	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	110, 647
AccBSI	CCGCTC	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	3 cut(s)	143, 189, 215
AclWI	GGATC	5 cut(s)	180, 193, 482, 495, 680
AcoI	YGGCCR	2 cut(s)	157, 669
AcsI	RAATTY	2 cut(s)	77, 664
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	4 cut(s)	234, 315, 506, 641
AfiI	CCNNNNNNNGG	2 cut(s)	107, 650
AgsI	TTSAA	2 cut(s)	256, 629
AjnI	CCWGG	6 cut(s)	125, 154, 193, 301, 370, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	3 cut(s)	24, 97, 518
AluI	AGCT	3 cut(s)	24, 97, 518
AlwI	GGATC	5 cut(s)	180, 193, 482, 495, 680
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	4 cut(s)	157, 167, 376, 669
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	77, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	544, 653
AsuC2I	CCSGG	2 cut(s)	166, 645
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	544, 653
AvrII	CCTAGG	1 cut(s)	391
BalI	TGGCCA	2 cut(s)	159, 671
BamHI	GGATCC	2 cut(s)	185, 487
BanI	GGYRCC	2 cut(s)	110, 647
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	176, 276
BciT130I	CCWGG	6 cut(s)	127, 156, 195, 303, 372, 510
BciVI	GTATCC	1 cut(s)	527
BcnI	CCSGG	2 cut(s)	166, 645
BfaI	CTAG	4 cut(s)	102, 224, 311, 392
BfmI	CTRYAG	2 cut(s)	87, 277
BfoI	RGCGCY	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	363
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	8 cut(s)	127, 156, 166, 195, 303, 372, 510, 645
Bme18I	GGWCC	2 cut(s)	544, 653
BmgT120I	GGNCC	2 cut(s)	544, 653
BmiI	GGNNCC	5 cut(s)	112, 187, 489, 546, 649
BmrFI	CCNGG	8 cut(s)	127, 156, 166, 195, 303, 372, 510, 645
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	141, 475
BmuI	ACTGGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	109, 177
BpuMI	CCSGG	2 cut(s)	166, 645
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BsaWI	WCCGGW	2 cut(s)	490, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 650
Bse1I	ACTGG	2 cut(s)	344, 401
Bse3DI	GCAATG	2 cut(s)	30, 450
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	6 cut(s)	127, 156, 195, 303, 372, 510
BseDI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	107, 650
BseMI	GCAATG	2 cut(s)	30, 450
BseNI	ACTGG	2 cut(s)	344, 401
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	4 cut(s)	159, 169, 378, 671
BshNI	GGYRCC	2 cut(s)	110, 647
BsiSI	CCGG	4 cut(s)	166, 491, 645, 651
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	107, 650
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	4 cut(s)	159, 169, 378, 671
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	185, 487, 685
Bsp19I	CCATGG	2 cut(s)	407, 689
BspACI	CCGC	3 cut(s)	143, 189, 215
BspANI	GGCC	4 cut(s)	159, 169, 378, 671
BspEI	TCCGGA	1 cut(s)	490
BspLI	GGNNCC	5 cut(s)	112, 187, 489, 546, 649
BspMAI	CTGCAG	2 cut(s)	91, 281
BspPI	GGATC	5 cut(s)	180, 193, 482, 495, 680
BspT107I	GGYRCC	2 cut(s)	110, 647
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	30, 450
BsrI	ACTGG	2 cut(s)	344, 401
BssECI	CCNNGG	9 cut(s)	164, 302, 391, 407, 508, 528, 540, 643, 689
BssMI	GATC	3 cut(s)	185, 487, 685
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
Bst2UI	CCWGG	6 cut(s)	127, 156, 195, 303, 372, 510
Bst4CI	ACNGT	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	161, 294, 597
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	407, 689
BstF5I	GGATG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	188, 490, 688
BstMBI	GATC	3 cut(s)	185, 487, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
BstNI	CCWGG	6 cut(s)	127, 156, 195, 303, 372, 510
BstSCI	CCNGG	8 cut(s)	125, 154, 164, 193, 301, 370, 508, 643
BstSFI	CTRYAG	2 cut(s)	87, 277
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	185, 487
BstXI	CCANNNNNNTGG	2 cut(s)	408, 679
BstYI	RGATCY	2 cut(s)	185, 487
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	4 cut(s)	159, 169, 378, 671
BtgI	CCRYGG	2 cut(s)	407, 689
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	84, 274
BtsIMutI	CAGTG	2 cut(s)	84, 274
Cac8I	GCNNGC	3 cut(s)	161, 294, 597
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	544, 653
CpoI	CGGWCCG	1 cut(s)	653
Csp6I	GTAC	4 cut(s)	233, 314, 505, 640
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	4 cut(s)	136, 408, 478, 690
CviQI	GTAC	4 cut(s)	233, 314, 505, 640
DdeI	CTNAG	1 cut(s)	218
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	3 cut(s)	187, 489, 687
DpnII	GATC	3 cut(s)	185, 487, 685
EaeI	YGGCCR	2 cut(s)	157, 669
Eco130I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
Eco47I	GGWCC	2 cut(s)	544, 653
Eco57I	CTGAAG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	6 cut(s)	125, 154, 193, 301, 370, 508
EcoT14I	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
FaeI	CATG	4 cut(s)	139, 411, 481, 693
FaiI	YATR	5 cut(s)	137, 290, 409, 479, 691
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	4 cut(s)	135, 407, 477, 689
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	102, 224, 311, 392
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	109, 177
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	159, 169, 378, 671
HapII	CCGG	4 cut(s)	166, 491, 645, 651
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	139, 411, 481, 693
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	4 cut(s)	260, 271, 307, 618
HpaII	CCGG	4 cut(s)	166, 491, 645, 651
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	491
HpyAV	CCTTC	3 cut(s)	55, 60, 466
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	89, 279, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	139, 411, 481, 693
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	185, 487, 685
LmnI	GCTCC	3 cut(s)	102, 196, 515
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	141, 475
MaeI	CTAG	4 cut(s)	102, 224, 311, 392
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	187, 489, 687
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	3 cut(s)	185, 487, 685
MboII	GAAGA	3 cut(s)	54, 508, 511
MflI	RGATCY	2 cut(s)	185, 487
MlsI	TGGCCA	2 cut(s)	159, 671
MluCI	AATT	4 cut(s)	77, 426, 664, 739
MluNI	TGGCCA	2 cut(s)	159, 671
Mly113I	GGCGCC	1 cut(s)	111
MmeI	TCCRAC	3 cut(s)	33, 595, 639
MnlI	CCTC	9 cut(s)	76, 133, 180, 188, 243, 368, 455, 553, 571
Mox20I	TGGCCA	2 cut(s)	159, 671
MroI	TCCGGA	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	2 cut(s)	159, 671
MslI	CAYNNNNRTG	2 cut(s)	17, 355
Msp20I	TGGCCA	2 cut(s)	159, 671
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	166, 491, 645, 651
MspR9I	CCNGG	8 cut(s)	127, 156, 166, 195, 303, 372, 510, 645
MvaI	CCWGG	6 cut(s)	127, 156, 195, 303, 372, 510
MwoI	GCNNNNNNNGC	4 cut(s)	41, 160, 293, 605
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	166, 645
NcoI	CCATGG	2 cut(s)	407, 689
NdeII	GATC	3 cut(s)	185, 487, 685
NlaIII	CATG	4 cut(s)	139, 411, 481, 693
NlaIV	GGNNCC	5 cut(s)	112, 187, 489, 546, 649
NmuCI	GTSAC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	260, 271, 307, 618
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	364
PluTI	GGCGCC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	6 cut(s)	125, 154, 193, 301, 370, 508
PspGI	CCWGG	6 cut(s)	125, 154, 193, 301, 370, 508
PspN4I	GGNNCC	5 cut(s)	112, 187, 489, 546, 649
PspPI	GGNCC	2 cut(s)	544, 653
PspPPI	RGGWCCY	1 cut(s)	544
PsrI	GAACNNNNNNTAC	2 cut(s)	406, 438
PstI	CTGCAG	2 cut(s)	91, 281
PsuI	RGATCY	2 cut(s)	185, 487
RsaI	GTAC	4 cut(s)	234, 315, 506, 641
RsaNI	GTAC	4 cut(s)	233, 314, 505, 640
RseI	CAYNNNNRTG	2 cut(s)	17, 355
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	185, 487, 685
Sau96I	GGNCC	2 cut(s)	544, 653
ScrFI	CCNGG	8 cut(s)	127, 156, 166, 195, 303, 372, 510, 645
SfaNI	GCATC	2 cut(s)	141, 475
SfcI	CTRYAG	2 cut(s)	87, 277
SfoI	GGCGCC	1 cut(s)	112
SinI	GGWCC	2 cut(s)	544, 653
SmiMI	CAYNNNNRTG	2 cut(s)	17, 355
Sse9I	AATT	4 cut(s)	77, 426, 664, 739
SsiI	CCGC	3 cut(s)	143, 189, 215
SspDI	GGCGCC	1 cut(s)	110
SspMI	CTAG	4 cut(s)	102, 224, 311, 392
StyD4I	CCNGG	8 cut(s)	125, 154, 164, 193, 301, 370, 508, 643
StyI	CCWWGG	5 cut(s)	391, 407, 528, 540, 689
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	180, 438, 522, 558
TasI	AATT	4 cut(s)	77, 426, 664, 739
TfiI	GAWTC	4 cut(s)	260, 271, 307, 618
TscAI	CASTG	2 cut(s)	91, 281
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	91, 281
VpaK11BI	GGWCC	2 cut(s)	544, 653
XapI	RAATTY	2 cut(s)	77, 664
XmaJI	CCTAGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	4 cut(s)	102, 224, 311, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.