Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

19549246 .. 19550455

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATCGCCACCACTGCCTTCCCCTCAGTCCTATCATCCTCAAAGTCTAAATTTGCGACCAGTGCAGTCCAGCTCCCAGGTGTTGGTGCCAATGCCTCCTCAAGGTTCTCCATGTCCGCCGACTGGATGCCCGGCGAGCCCCGGCCTCCATACCTTGATGGCTCTGCACCCGGTGACTTTGGATTTGACCCACTTCGGCTAGGAGAAGTGCCCGAGAACTTGGAGAGGTTCAAGGAGTCTGAGCTCATTCACTGCAGATGGGCAATGCTTGCTGTACCAGGGATTCTTGTACCAGAGGCTTTGGGATTGGGCAACTGGGTAAAAGCACAAGAGTGGGCTGCCGTTCCAGGAGGCCAAGCCACCTACTTAGGCAACCCAGTTCCATGGGGCACTTTGCCTACAATTTTGGTCATCGAATTCCTTTCCATTGCCTTTGTAGAACACCAACGCAGCATGGAGAAGGACACTGAAAAGAAGAAGTACCCTGGCGGGGCTTTTGACCCCTTGGGCTACTCCAAGGACCCCAAGAAGTTCGAGGAGTACAAAGTCAAAGAGATAAAAAATGGCCGGCTTGCGTTGTTGGCTTTCGTTGGGTTTGTTGTTCAACAATCGGCATACCCTGGCACAGGACCATTGGAGAACCTGGCTACTCACTTGGCTGACCCATGGCACAACAACATCGGGGATGTCCTCATCCCCAAAGGGATTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

248

Amino Acids

26.7

Weight (kDa)

5.85

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	58 - 212	1.2e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	2 cut(s)	144, 516
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	77, 443
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	4 cut(s)	303, 318, 509, 569
AfiI	CCNNNNNNNGG	5 cut(s)	110, 129, 150, 517, 653
AgsI	TTSAA	2 cut(s)	259, 632
AjnI	CCWGG	6 cut(s)	103, 304, 373, 511, 646, 669
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	24, 100, 271
AluI	AGCT	3 cut(s)	24, 100, 271
Alw21I	GWGCWC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	170, 379, 592
ApeKI	GCWGC	2 cut(s)	365, 477
ApoI	RAATTY	2 cut(s)	77, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	2 cut(s)	547, 656
AsuC2I	CCSGG	3 cut(s)	159, 169, 198
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	547, 656
BaeGI	GKGCMC	2 cut(s)	240, 419
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	168, 273
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	352, 489
BccI	CCATC	2 cut(s)	179, 279
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	6 cut(s)	105, 306, 375, 513, 648, 671
BcnI	CCSGG	3 cut(s)	159, 169, 198
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	2 cut(s)	366, 478
BlsI	GCNGC	2 cut(s)	367, 479
Bme1390I	CCNGG	9 cut(s)	105, 159, 169, 198, 306, 375, 513, 648, 671
Bme18I	GGWCC	2 cut(s)	547, 656
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	547, 656
BmiI	GGNNCC	2 cut(s)	115, 549
BmrFI	CCNGG	9 cut(s)	105, 159, 169, 198, 306, 375, 513, 648, 671
BmrI	ACTGGG	2 cut(s)	352, 398
BmsI	GCATC	2 cut(s)	39, 144
BmuI	ACTGGG	2 cut(s)	352, 398
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	3 cut(s)	159, 169, 198
BsaJI	CCNNGG	9 cut(s)	103, 167, 305, 410, 511, 531, 543, 646, 692
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 129, 150, 517, 653
Bse118I	RCCGGY	1 cut(s)	594
Bse1I	ACTGG	4 cut(s)	87, 155, 347, 404
Bse3DI	GCAATG	2 cut(s)	297, 453
BseBI	CCWGG	6 cut(s)	105, 306, 375, 513, 648, 671
BseDI	CCNNGG	9 cut(s)	103, 167, 305, 410, 511, 531, 543, 646, 692
BseGI	GGATG	4 cut(s)	62, 159, 718, 720
BseLI	CCNNNNNNNGG	5 cut(s)	110, 129, 150, 517, 653
BseMI	GCAATG	2 cut(s)	297, 453
BseMII	CTCAG	2 cut(s)	66, 258
BseNI	ACTGG	4 cut(s)	87, 155, 347, 404
BseRI	GAGGAG	2 cut(s)	115, 578
BseSI	GKGCMC	2 cut(s)	240, 419
BseXI	GCAGC	2 cut(s)	352, 489
BsgI	GTGCAG	2 cut(s)	111, 177
BshFI	GGCC	3 cut(s)	172, 381, 594
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	159, 169, 198, 595
BslI	CCNNNNNNNGG	5 cut(s)	110, 129, 150, 517, 653
BsnI	GGCC	3 cut(s)	172, 381, 594
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	168, 240, 273, 419
Bsp19I	CCATGG	2 cut(s)	410, 692
BspACI	CCGC	2 cut(s)	144, 516
BspANI	GGCC	3 cut(s)	172, 381, 594
BspCNI	CTCAG	2 cut(s)	65, 259
BspLI	GGNNCC	2 cut(s)	115, 549
BspMAI	CTGCAG	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	297, 453
BsrFI	RCCGGY	1 cut(s)	594
BsrI	ACTGG	4 cut(s)	87, 155, 347, 404
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	9 cut(s)	103, 167, 305, 410, 511, 531, 543, 646, 692
BssT1I	CCWWGG	4 cut(s)	410, 531, 543, 692
Bst2UI	CCWGG	6 cut(s)	105, 306, 375, 513, 648, 671
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	164, 297, 596, 600
BstDEI	CTNAG	3 cut(s)	52, 267, 394
BstDSI	CCRYGG	2 cut(s)	410, 692
BstENI	CCTNNNNNAGG	2 cut(s)	127, 651
BstF5I	GGATG	4 cut(s)	62, 159, 718, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
BstNI	CCWGG	6 cut(s)	105, 306, 375, 513, 648, 671
BstSCI	CCNGG	9 cut(s)	103, 157, 167, 196, 304, 373, 511, 646, 669
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	240, 419
BstV1I	GCAGC	2 cut(s)	352, 489
BstXI	CCANNNNNNTGG	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	172, 381, 594
BtgI	CCRYGG	2 cut(s)	410, 692
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	62, 159, 718, 720
BtsI	GCAGTG	2 cut(s)	39, 277
BtsIMutI	CAGTG	4 cut(s)	39, 94, 277, 492
Cac8I	GCNNGC	4 cut(s)	164, 297, 596, 600
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	2 cut(s)	547, 656
Csp6I	GTAC	4 cut(s)	302, 317, 508, 568
CviAII	CATG	4 cut(s)	139, 411, 481, 693
CviQI	GTAC	4 cut(s)	302, 317, 508, 568
DdeI	CTNAG	3 cut(s)	52, 267, 394
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	592
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	4 cut(s)	410, 531, 543, 692
Eco24I	GRGCYC	2 cut(s)	168, 273
Eco47I	GGWCC	2 cut(s)	547, 656
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	2 cut(s)	127, 651
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	6 cut(s)	103, 304, 373, 511, 646, 669
EcoT14I	CCWWGG	4 cut(s)	410, 531, 543, 692
EcoT38I	GRGCYC	2 cut(s)	168, 273
ErhI	CCWWGG	4 cut(s)	410, 531, 543, 692
FaeI	CATG	4 cut(s)	142, 414, 484, 696
FaiI	YATR	6 cut(s)	140, 178, 412, 482, 643, 694
FatI	CATG	4 cut(s)	138, 410, 480, 692
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	2 cut(s)	366, 478
FokI	GGATG	4 cut(s)	49, 166, 707, 725
FriOI	GRGCYC	2 cut(s)	168, 273
Fsp4HI	GCNGC	2 cut(s)	366, 478
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	2 cut(s)	366, 478
HaeIII	GGCC	3 cut(s)	172, 381, 594
HapII	CCGG	4 cut(s)	159, 169, 198, 595
Hin1II	CATG	4 cut(s)	142, 414, 484, 696
HinfI	GANTC	2 cut(s)	263, 310
HpaII	CCGG	4 cut(s)	159, 169, 198, 595
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	55, 481
HpyCH4V	TGCA	3 cut(s)	92, 194, 282
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
HpyF3I	CTNAG	3 cut(s)	52, 267, 394
Hsp92II	CATG	4 cut(s)	142, 414, 484, 696
KroI	GCCGGC	1 cut(s)	594
KroNI	GCCGGC	1 cut(s)	596
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	2 cut(s)	352, 489
LweI	GCATC	2 cut(s)	39, 144
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	1 cut(s)	514
MhlI	GDGCHC	4 cut(s)	168, 240, 273, 419
MluCI	AATT	3 cut(s)	77, 429, 443
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	17, 358
MspI	CCGG	4 cut(s)	159, 169, 198, 595
MspR9I	CCNGG	9 cut(s)	105, 159, 169, 198, 306, 375, 513, 648, 671
MvaI	CCWGG	6 cut(s)	105, 306, 375, 513, 648, 671
MwoI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
NaeI	GCCGGC	1 cut(s)	596
NciI	CCSGG	3 cut(s)	159, 169, 198
NcoI	CCATGG	2 cut(s)	410, 692
NgoMIV	GCCGGC	1 cut(s)	594
NlaIII	CATG	4 cut(s)	142, 414, 484, 696
NlaIV	GGNNCC	2 cut(s)	115, 549
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	367, 479
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	6 cut(s)	103, 304, 373, 511, 646, 669
PspGI	CCWGG	6 cut(s)	103, 304, 373, 511, 646, 669
PspN4I	GGNNCC	2 cut(s)	115, 549
PspPI	GGNCC	2 cut(s)	547, 656
PspPPI	RGGWCCY	1 cut(s)	547
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	4 cut(s)	303, 318, 509, 569
RsaNI	GTAC	4 cut(s)	302, 317, 508, 568
RseI	CAYNNNNRTG	2 cut(s)	17, 358
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	366, 478
Sau96I	GGNCC	2 cut(s)	547, 656
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	9 cut(s)	105, 159, 169, 198, 306, 375, 513, 648, 671
SduI	GDGCHC	4 cut(s)	168, 240, 273, 419
SetI	ASST	9 cut(s)	26, 102, 109, 134, 183, 257, 273, 392, 672
SfaNI	GCATC	2 cut(s)	39, 144
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	547, 656
SmiMI	CAYNNNNRTG	2 cut(s)	17, 358
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	77, 429, 443
SsiI	CCGC	2 cut(s)	144, 516
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	9 cut(s)	103, 157, 167, 196, 304, 373, 511, 646, 669
StyI	CCWWGG	4 cut(s)	410, 531, 543, 692
TaqI	TCGA	2 cut(s)	441, 561
TasI	AATT	3 cut(s)	77, 429, 443
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	4 cut(s)	46, 94, 284, 499
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	365, 477
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	4 cut(s)	46, 94, 284, 499
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	547, 656
XagI	CCTNNNNNAGG	2 cut(s)	127, 651
XapI	RAATTY	2 cut(s)	77, 443
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.