Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Forward (+)

15990280 .. 15992121

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATCGCCACCACAGCCTTCCCTTCAGTCCTCTCATCCTCCAAGTCTAAATTTGCCACCAGTGCAGTCCAGCTCCCCAGTGTTGGTGCCAATGCCTCCTCCAGGTTCTCCATGTCCGCTGATTGGATGCCCGGCCAGCCGAGACCTCCTTATCTAGACGGCTCTGCACCCGGTGACTTTGGATTTGACCCACTTCGGCTAGGAGAAGTGCCAGAAAACTTGGAGAGGTTCAAGGAGTCTGAGCTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATTCTAGTACCAGAGGCTTTGGGATTGGGCAACTGGGTAAAGGCACAAGAGTGGGCTGCCGTTCCAGGAGGCCAAGCCACCTACTTAGGCAACCCAGTTCCATGGGGCACATTGCCCACAATTTTGGTCATCGAGTTCCTTTCCATTGCTTTTGTAGAGCACCAACGCAGCATGGAAAAGGACCCTGAGAAGAAAAAGTACCCTGGTGGAGCTTTTGACCCCTTGGGCTACTCCAAGGACCCTAAGAAGTTTGAGGAATACAAAGTCAAGGAGATAAAAAACGGCCGGCTCGCATTGTTGGCTTTTGTGGGTTTCGTTGTTCAACAGTCGGCGTACCCTGGCACCGGACCTTTGGAGAATTTGGCCACTCACTTGGCTGACCCATGGCACAACAACATTGGGGACGTCATTATCCCAAAGGGGATTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

248

Amino Acids

26.72

Weight (kDa)

6.11

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	717
AccB1I	GGYRCC	2 cut(s)	113, 650
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	3 cut(s)	160, 592, 672
AcsI	RAATTY	2 cut(s)	77, 667
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	714
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	318, 509, 644
AfiI	CCNNNNNNNGG	4 cut(s)	110, 129, 150, 653
AgsI	TTSAA	2 cut(s)	259, 632
AjnI	CCWGG	5 cut(s)	128, 304, 373, 511, 646
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	24, 100, 271, 521
AluI	AGCT	4 cut(s)	24, 100, 271, 521
Alw21I	GWGCWC	2 cut(s)	273, 471
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	4 cut(s)	160, 379, 592, 672
ApeKI	GCWGC	2 cut(s)	365, 477
ApoI	RAATTY	2 cut(s)	77, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	3 cut(s)	490, 547, 656
AsuC2I	CCSGG	2 cut(s)	159, 198
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	490, 547, 656
BaeGI	GKGCMC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	2 cut(s)	113, 650
BanII	GRGCYC	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
Bbv12I	GWGCWC	2 cut(s)	273, 471
BbvI	GCAGC	2 cut(s)	352, 489
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	3 cut(s)	202, 353, 607
BciT130I	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BcnI	CCSGG	2 cut(s)	159, 198
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	182, 227, 314
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	2 cut(s)	366, 478
BlsI	GCNGC	2 cut(s)	367, 479
Bme1390I	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
Bme18I	GGWCC	3 cut(s)	490, 547, 656
BmgT120I	GGNCC	3 cut(s)	490, 547, 656
BmiI	GGNNCC	4 cut(s)	115, 492, 549, 652
BmrFI	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
BmrI	ACTGGG	3 cut(s)	99, 352, 398
BmsI	GCATC	2 cut(s)	39, 144
BmuI	ACTGGG	3 cut(s)	99, 352, 398
BpmI	CTGGAG	1 cut(s)	112
BpuMI	CCSGG	2 cut(s)	159, 198
BsaHI	GRCGYC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	7 cut(s)	305, 410, 511, 531, 543, 646, 692
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 129, 150, 653
Bse118I	RCCGGY	1 cut(s)	594
Bse1I	ACTGG	4 cut(s)	87, 105, 347, 404
Bse3DI	GCAATG	2 cut(s)	419, 453
BseBI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BseDI	CCNNGG	7 cut(s)	305, 410, 511, 531, 543, 646, 692
BseGI	GGATG	2 cut(s)	62, 159
BseLI	CCNNNNNNNGG	4 cut(s)	110, 129, 150, 653
BseMI	GCAATG	2 cut(s)	419, 453
BseMII	CTCAG	2 cut(s)	258, 486
BseNI	ACTGG	4 cut(s)	87, 105, 347, 404
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	419
BseX3I	CGGCCG	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	352, 489
BsgI	GTGCAG	2 cut(s)	111, 177
Bsh1285I	CGRYCG	1 cut(s)	595
BshFI	GGCC	4 cut(s)	162, 381, 594, 674
BshNI	GGYRCC	2 cut(s)	113, 650
BsiEI	CGRYCG	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	273, 471
BsiSI	CCGG	4 cut(s)	159, 198, 595, 654
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	4 cut(s)	110, 129, 150, 653
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	4 cut(s)	162, 381, 594, 674
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	273, 419, 471
Bsp19I	CCATGG	2 cut(s)	410, 692
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	162, 381, 594, 674
BspCNI	CTCAG	2 cut(s)	259, 487
BspLI	GGNNCC	4 cut(s)	115, 492, 549, 652
BspMAI	CTGCAG	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	113, 650
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	419, 453
BsrFI	RCCGGY	1 cut(s)	594
BsrI	ACTGG	4 cut(s)	87, 105, 347, 404
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	7 cut(s)	305, 410, 511, 531, 543, 646, 692
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	4 cut(s)	410, 531, 543, 692
Bst2UI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
Bst4CI	ACNGT	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	714
BstC8I	GCNNGC	4 cut(s)	164, 297, 596, 600
BstDEI	CTNAG	4 cut(s)	267, 394, 495, 552
BstDSI	CCRYGG	2 cut(s)	410, 692
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	62, 159
BstMAI	GTCTC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	595
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
BstNI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BstSCI	CCNGG	7 cut(s)	128, 157, 196, 304, 373, 511, 646
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	352, 489
BstXI	CCANNNNNNTGG	3 cut(s)	411, 433, 682
BstZI	CGGCCG	1 cut(s)	592
BsuRI	GGCC	4 cut(s)	162, 381, 594, 674
BtgI	CCRYGG	2 cut(s)	410, 692
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	62, 159
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	94, 112, 277
Cac8I	GCNNGC	4 cut(s)	164, 297, 596, 600
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	490, 547, 656
Csp6I	GTAC	3 cut(s)	317, 508, 643
CviAII	CATG	4 cut(s)	139, 411, 481, 693
CviQI	GTAC	3 cut(s)	317, 508, 643
DdeI	CTNAG	4 cut(s)	267, 394, 495, 552
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	3 cut(s)	160, 592, 672
EagI	CGGCCG	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	592
Eco130I	CCWWGG	4 cut(s)	410, 531, 543, 692
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	490, 547, 656
Eco52I	CGGCCG	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	490, 547
EcoRII	CCWGG	5 cut(s)	128, 304, 373, 511, 646
EcoT14I	CCWWGG	4 cut(s)	410, 531, 543, 692
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	4 cut(s)	410, 531, 543, 692
FaeI	CATG	4 cut(s)	142, 414, 484, 696
FaiI	YATR	5 cut(s)	140, 293, 412, 482, 694
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	4 cut(s)	138, 410, 480, 692
Fnu4HI	GCNGC	2 cut(s)	366, 478
FokI	GGATG	2 cut(s)	49, 166
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	366, 478
FspBI	CTAG	3 cut(s)	182, 227, 314
GluI	GCNGC	2 cut(s)	366, 478
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	162, 381, 594, 674
HapII	CCGG	4 cut(s)	159, 198, 595, 654
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	142, 414, 484, 696
HinfI	GANTC	2 cut(s)	263, 310
HpaII	CCGG	4 cut(s)	159, 198, 595, 654
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	55, 60
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	3 cut(s)	92, 194, 282
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
HpyF3I	CTNAG	4 cut(s)	267, 394, 495, 552
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	142, 414, 484, 696
KroI	GCCGGC	1 cut(s)	594
KroNI	GCCGGC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	105, 518
Lsp1109I	GCAGC	2 cut(s)	352, 489
LweI	GCATC	2 cut(s)	39, 144
MaeI	CTAG	3 cut(s)	182, 227, 314
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	273, 419, 471
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	3 cut(s)	77, 429, 667
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	68, 76, 133, 136, 183, 246, 316, 371, 556
Mox20I	TGGCCA	1 cut(s)	674
MroNI	GCCGGC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	674
MslI	CAYNNNNRTG	2 cut(s)	17, 358
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	4 cut(s)	159, 198, 595, 654
MspR9I	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
MvaI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
MwoI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
NaeI	GCCGGC	1 cut(s)	596
NciI	CCSGG	2 cut(s)	159, 198
NcoI	CCATGG	2 cut(s)	410, 692
NgoMIV	GCCGGC	1 cut(s)	594
NlaIII	CATG	4 cut(s)	142, 414, 484, 696
NlaIV	GGNNCC	4 cut(s)	115, 492, 549, 652
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	367, 479
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	2 cut(s)	490, 547
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	490, 547
Psp6I	CCWGG	5 cut(s)	128, 304, 373, 511, 646
PspGI	CCWGG	5 cut(s)	128, 304, 373, 511, 646
PspN4I	GGNNCC	4 cut(s)	115, 492, 549, 652
PspPI	GGNCC	3 cut(s)	490, 547, 656
PspPPI	RGGWCCY	2 cut(s)	490, 547
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	318, 509, 644
RsaNI	GTAC	3 cut(s)	317, 508, 643
RseI	CAYNNNNRTG	2 cut(s)	17, 358
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	366, 478
Sau96I	GGNCC	3 cut(s)	490, 547, 656
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
SduI	GDGCHC	3 cut(s)	273, 419, 471
SfaNI	GCATC	2 cut(s)	39, 144
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	490, 547, 656
SmiMI	CAYNNNNRTG	2 cut(s)	17, 358
Sse9I	AATT	3 cut(s)	77, 429, 667
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	3 cut(s)	182, 227, 314
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	7 cut(s)	128, 157, 196, 304, 373, 511, 646
StyI	CCWWGG	4 cut(s)	410, 531, 543, 692
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	77, 429, 667
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	3 cut(s)	94, 112, 284
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	365, 477
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	3 cut(s)	94, 112, 284
VpaK11BI	GGWCC	3 cut(s)	490, 547, 656
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	77, 667
XbaI	TCTAGA	1 cut(s)	181
XspI	CTAG	3 cut(s)	182, 227, 314
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.