Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

53882727 .. 53885651

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACATTGTGTTTGGTGATTGTGGGTTTCAGTGACTTTGGATTCGACCCGCTTAGACTAGGAGAAGTACCAGAGAACTTAGAGAGGTTCAAGGAATCTGAACTCATTCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATTCTAGTACCAGAAGCATTGGGATTGGGGAACTGGGTAAAGGCACAAGAATGGGCAGCAATTCCAGGAGGCCAAGCCACTTACCTAGGCAATCCAGTTCCATGGGGGACTTTGCCTACAATATTGGTGATCGAGTTCCTCTCCATTGCTTTCGTAGAGCACCAACGCAGCATGGAAAAGGACCCGGAGAAGAAGAAGTACCCCGGTGGAGCTTTTGACCCCTTGGGTTACTCCAAGGACCCTAAGAAGTTCGAGGAATACAAAGTCAAAGAGATCAAAAATGGTCGGCTCGCATTGTTGGCTTTTGTGGGATTCGTAGTTCAACAATCGGCGTACCCTGGCACCGGACCATTGGAGAATTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTCATTATCCCCAAAGGGCTTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

191

Amino Acids

21.11

Weight (kDa)

5.59

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	11 - 156	3e-42	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	4 cut(s)	69, 150, 341, 476
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	91, 464
AjnI	CCWGG	3 cut(s)	136, 205, 478
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	197, 309
ApoI	RAATTY	1 cut(s)	499
ArsI	GACNNNNNNTTYG	3 cut(s)	26, 27, 58
Asp700I	GAANNNNTTC	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	322, 379, 488
AsuC2I	CCSGG	2 cut(s)	326, 345
AsuHPI	GGTGA	2 cut(s)	28, 280
AvaII	GGWCC	3 cut(s)	322, 379, 488
AvrII	CCTAGG	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	209, 321
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	3 cut(s)	138, 207, 480
BcnI	CCSGG	2 cut(s)	326, 345
BfaI	CTAG	3 cut(s)	59, 146, 227
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	198, 310
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	199, 311
Bme1390I	CCNGG	5 cut(s)	138, 207, 326, 345, 480
Bme18I	GGWCC	3 cut(s)	322, 379, 488
BmgT120I	GGNCC	3 cut(s)	322, 379, 488
BmiI	GGNNCC	3 cut(s)	324, 381, 484
BmrFI	CCNGG	5 cut(s)	138, 207, 326, 345, 480
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpuMI	CCSGG	2 cut(s)	326, 345
BsaJI	CCNNGG	8 cut(s)	137, 226, 242, 343, 363, 375, 478, 524
BsaWI	WCCGGW	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	179, 236
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	138, 207, 480
BseDI	CCNNGG	8 cut(s)	137, 226, 242, 343, 363, 375, 478, 524
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	179, 236
BseXI	GCAGC	2 cut(s)	209, 321
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	3 cut(s)	326, 345, 486
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	270, 414
Bsp19I	CCATGG	2 cut(s)	242, 524
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	324, 381, 484
BspMAI	CTGCAG	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	179, 236
BssECI	CCNNGG	8 cut(s)	137, 226, 242, 343, 363, 375, 478, 524
BssMI	GATC	2 cut(s)	270, 414
BssT1I	CCWWGG	5 cut(s)	226, 242, 363, 375, 524
Bst2UI	CCWGG	3 cut(s)	138, 207, 480
BstC8I	GCNNGC	2 cut(s)	129, 432
BstDEI	CTNAG	3 cut(s)	53, 79, 384
BstDSI	CCRYGG	2 cut(s)	242, 524
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	273, 417
BstMBI	GATC	2 cut(s)	270, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 440
BstNI	CCWGG	3 cut(s)	138, 207, 480
BstSCI	CCNGG	5 cut(s)	136, 205, 324, 343, 478
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	209, 321
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	2 cut(s)	242, 524
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	37, 109
Cac8I	GCNNGC	2 cut(s)	129, 432
Cfr13I	GGNCC	3 cut(s)	322, 379, 488
Csp6I	GTAC	4 cut(s)	68, 149, 340, 475
CviAII	CATG	3 cut(s)	243, 313, 525
CviJI	RGCY	9 cut(s)	122, 213, 218, 353, 430, 443, 506, 518, 565
CviKI_1	RGCY	9 cut(s)	122, 213, 218, 353, 430, 443, 506, 518, 565
CviQI	GTAC	4 cut(s)	68, 149, 340, 475
DdeI	CTNAG	3 cut(s)	53, 79, 384
DpnI	GATC	2 cut(s)	272, 416
DpnII	GATC	2 cut(s)	270, 414
Eco130I	CCWWGG	5 cut(s)	226, 242, 363, 375, 524
Eco47I	GGWCC	3 cut(s)	322, 379, 488
EcoO109I	RGGNCCY	2 cut(s)	322, 379
EcoRII	CCWGG	3 cut(s)	136, 205, 478
EcoT14I	CCWWGG	5 cut(s)	226, 242, 363, 375, 524
ErhI	CCWWGG	5 cut(s)	226, 242, 363, 375, 524
FaeI	CATG	3 cut(s)	246, 316, 528
FaiI	YATR	4 cut(s)	125, 244, 314, 526
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	242, 312, 524
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	198, 310
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	198, 310
FspBI	CTAG	3 cut(s)	59, 146, 227
GluI	GCNGC	2 cut(s)	198, 310
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	3 cut(s)	326, 345, 486
Hin1II	CATG	3 cut(s)	246, 316, 528
HinfI	GANTC	4 cut(s)	42, 95, 142, 453
HpaII	CCGG	3 cut(s)	326, 345, 486
HphI	GGTGA	2 cut(s)	28, 280
Hpy188I	TCNGA	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 440
HpyF3I	CTNAG	3 cut(s)	53, 79, 384
Hsp92II	CATG	3 cut(s)	246, 316, 528
Kzo9I	GATC	2 cut(s)	270, 414
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	2 cut(s)	209, 321
MaeI	CTAG	3 cut(s)	59, 146, 227
MaeIII	GTNAC	2 cut(s)	32, 368
MalI	GATC	2 cut(s)	272, 416
MboI	GATC	2 cut(s)	270, 414
MboII	GAAGA	2 cut(s)	343, 346
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	201, 499
MnlI	CCTC	4 cut(s)	78, 203, 290, 388
MroXI	GAANNNNTTC	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	190
MspI	CCGG	3 cut(s)	326, 345, 486
MspR9I	CCNGG	5 cut(s)	138, 207, 326, 345, 480
MvaI	CCWGG	3 cut(s)	138, 207, 480
MwoI	GCNNNNNNNGC	2 cut(s)	128, 440
NciI	CCSGG	2 cut(s)	326, 345
NcoI	CCATGG	2 cut(s)	242, 524
NdeII	GATC	2 cut(s)	270, 414
NlaIII	CATG	3 cut(s)	246, 316, 528
NlaIV	GGNNCC	3 cut(s)	324, 381, 484
NmuCI	GTSAC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	42, 95, 142, 453
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	199, 311
PpuMI	RGGWCCY	2 cut(s)	322, 379
Psp5II	RGGWCCY	2 cut(s)	322, 379
Psp6I	CCWGG	3 cut(s)	136, 205, 478
PspGI	CCWGG	3 cut(s)	136, 205, 478
PspN4I	GGNNCC	3 cut(s)	324, 381, 484
PspPI	GGNCC	3 cut(s)	322, 379, 488
PspPPI	RGGWCCY	2 cut(s)	322, 379
PstI	CTGCAG	1 cut(s)	116
RsaI	GTAC	4 cut(s)	69, 150, 341, 476
RsaNI	GTAC	4 cut(s)	68, 149, 340, 475
RseI	CAYNNNNRTG	1 cut(s)	190
SatI	GCNGC	2 cut(s)	198, 310
Sau3AI	GATC	2 cut(s)	270, 414
Sau96I	GGNCC	3 cut(s)	322, 379, 488
ScrFI	CCNGG	5 cut(s)	138, 207, 326, 345, 480
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	3 cut(s)	89, 228, 355
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	322, 379, 488
SmiMI	CAYNNNNRTG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	201, 499
SsiI	CCGC	1 cut(s)	50
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	3 cut(s)	59, 146, 227
StyD4I	CCNGG	5 cut(s)	136, 205, 324, 343, 478
StyI	CCWWGG	5 cut(s)	226, 242, 363, 375, 524
TaqI	TCGA	3 cut(s)	45, 273, 393
TasI	AATT	2 cut(s)	201, 499
TfiI	GAWTC	4 cut(s)	42, 95, 142, 453
TscAI	CASTG	2 cut(s)	37, 116
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	197, 309
Tsp45I	GTSAC	1 cut(s)	32
TspRI	CASTG	2 cut(s)	37, 116
VpaK11BI	GGWCC	3 cut(s)	322, 379, 488
XapI	RAATTY	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	59, 146, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.