Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

14126649 .. 14128041

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATCGCCACTACTGCCTTCCCTTCAGTCCTCTCATCCTCCAAGTCTAAATTTGCGACCAGCGCAGTCCAGCTCACAGGTATTGGTGCCAATGCCCCCTCCAGGTTCTCCATGTCCGCCGAGTGGATGCCCGGCGAGCCCCGCCCTCCTTACCTCGACGGCTCCGCCCCCGGTGACTTTGGATTTGACCCACTTCGGCTAGGAGAAGTGCCGGAGAACTTGGAGAGGTTCAAGGAGTCCGAGCTCATTCACTGCAGATGGGCAATGCTTGCTGTTCCAGGGATTCTAGTACCAGAGGCTTTGGGATTGGGCAACTGGGTAAAAGCACAGGAGTGGGCTGCCGTTCCAGGAGGCCAAGCCACCTACTTAGGCAATCCAGTTCCATGGGGCACTTTGCCTACAATTTTGGTCATCGAATTCCTTTCCATTGCCTTTGTAGAACACCAACGCAGCATGGAGAAGGACCCTGAGAAGAAGAAGTACCCTGGTGGCGCTTTTGACCCCTTGGGCTACTCCAAGGACCCCAAGAAGTTCGAGGAATACAAGGTCAAAGAGATCAAAAATGGCCGGCTTGCGTTGTTGGCTTTCGTCGGGTTTGTTGTTCAACAATCGGCGTACCCTGGCACCGGACCGTTGGAGAACTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGGGATGTCATCATCCCCAAAGGGATTTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

248

Amino Acids

26.77

Weight (kDa)

5.85

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	58 - 212	1.3e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	113, 650
AciI	CCGC	3 cut(s)	144, 169, 192
AclWI	GGATC	1 cut(s)	683
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	77, 443
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	318, 509, 644
AfiI	CCNNNNNNNGG	3 cut(s)	129, 150, 653
AgsI	TTSAA	2 cut(s)	259, 632
AjnI	CCWGG	5 cut(s)	128, 304, 373, 511, 646
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	24, 100, 271
AluI	AGCT	3 cut(s)	24, 100, 271
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	2 cut(s)	379, 592
ApeKI	GCWGC	2 cut(s)	365, 477
ApoI	RAATTY	2 cut(s)	77, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	2 cut(s)	92, 521
AspS9I	GGNCC	3 cut(s)	490, 547, 656
AsuC2I	CCSGG	2 cut(s)	159, 198
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	490, 547, 656
BaeGI	GKGCMC	1 cut(s)	419
BanI	GGYRCC	2 cut(s)	113, 650
BanII	GRGCYC	2 cut(s)	168, 273
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	352, 489
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	2 cut(s)	202, 353
BciT130I	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BcnI	CCSGG	2 cut(s)	159, 198
BfaI	CTAG	2 cut(s)	227, 314
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	522
BisI	GCNGC	2 cut(s)	366, 478
BlsI	GCNGC	2 cut(s)	367, 479
Bme1390I	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
Bme18I	GGWCC	3 cut(s)	490, 547, 656
BmgT120I	GGNCC	3 cut(s)	490, 547, 656
BmiI	GGNNCC	5 cut(s)	115, 190, 492, 549, 652
BmrFI	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	39, 144
BmuI	ACTGGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	112
BpuMI	CCSGG	2 cut(s)	159, 198
BsaJI	CCNNGG	8 cut(s)	196, 305, 410, 511, 531, 543, 646, 692
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 150, 653
Bse118I	RCCGGY	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	347, 404
Bse3DI	GCAATG	2 cut(s)	297, 453
BseBI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BseDI	CCNNGG	8 cut(s)	196, 305, 410, 511, 531, 543, 646, 692
BseGI	GGATG	4 cut(s)	62, 159, 718, 720
BseLI	CCNNNNNNNGG	3 cut(s)	129, 150, 653
BseMI	GCAATG	2 cut(s)	297, 453
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	347, 404
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	352, 489
BshFI	GGCC	2 cut(s)	381, 594
BshNI	GGYRCC	2 cut(s)	113, 650
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	5 cut(s)	159, 198, 239, 595, 654
BslI	CCNNNNNNNGG	3 cut(s)	129, 150, 653
BsnI	GGCC	2 cut(s)	381, 594
Bsp1286I	GDGCHC	3 cut(s)	168, 273, 419
Bsp143I	GATC	2 cut(s)	582, 688
Bsp19I	CCATGG	2 cut(s)	410, 692
BspACI	CCGC	3 cut(s)	144, 169, 192
BspANI	GGCC	2 cut(s)	381, 594
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	5 cut(s)	115, 190, 492, 549, 652
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	1 cut(s)	683
BspT107I	GGYRCC	2 cut(s)	113, 650
BsrDI	GCAATG	2 cut(s)	297, 453
BsrFI	RCCGGY	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	347, 404
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	8 cut(s)	196, 305, 410, 511, 531, 543, 646, 692
BssMI	GATC	2 cut(s)	582, 688
BssT1I	CCWWGG	4 cut(s)	410, 531, 543, 692
Bst2UI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
Bst4CI	ACNGT	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	164, 297, 596, 600
BstDEI	CTNAG	2 cut(s)	394, 495
BstDSI	CCRYGG	2 cut(s)	410, 692
BstF5I	GGATG	4 cut(s)	62, 159, 718, 720
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	92, 521
BstKTI	GATC	2 cut(s)	585, 691
BstMBI	GATC	2 cut(s)	582, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 89, 163, 168, 296, 608
BstNI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
BstSCI	CCNGG	7 cut(s)	128, 157, 196, 304, 373, 511, 646
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	352, 489
BstXI	CCANNNNNNTGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	381, 594
BtgI	CCRYGG	2 cut(s)	410, 692
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	62, 159, 718, 720
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	4 cut(s)	164, 297, 596, 600
CfoI	GCGC	2 cut(s)	92, 521
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	490, 547, 656
CpoI	CGGWCCG	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	317, 508, 643
CspI	CGGWCCG	1 cut(s)	656
CviAII	CATG	4 cut(s)	139, 411, 481, 693
CviQI	GTAC	3 cut(s)	317, 508, 643
DdeI	CTNAG	2 cut(s)	394, 495
DpnI	GATC	2 cut(s)	584, 690
DpnII	GATC	2 cut(s)	582, 688
EaeI	YGGCCR	1 cut(s)	592
EciI	GGCGGA	2 cut(s)	133, 181
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	4 cut(s)	410, 531, 543, 692
Eco24I	GRGCYC	2 cut(s)	168, 273
Eco47I	GGWCC	3 cut(s)	490, 547, 656
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	490, 547
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	5 cut(s)	128, 304, 373, 511, 646
EcoT14I	CCWWGG	4 cut(s)	410, 531, 543, 692
EcoT38I	GRGCYC	2 cut(s)	168, 273
ErhI	CCWWGG	4 cut(s)	410, 531, 543, 692
FaeI	CATG	4 cut(s)	142, 414, 484, 696
FaiI	YATR	4 cut(s)	140, 412, 482, 694
FatI	CATG	4 cut(s)	138, 410, 480, 692
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	366, 478
FokI	GGATG	4 cut(s)	49, 166, 707, 725
FriOI	GRGCYC	2 cut(s)	168, 273
Fsp4HI	GCNGC	2 cut(s)	366, 478
FspBI	CTAG	2 cut(s)	227, 314
GlaI	GCGC	2 cut(s)	91, 520
GluI	GCNGC	2 cut(s)	366, 478
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	381, 594
HapII	CCGG	5 cut(s)	159, 198, 239, 595, 654
HhaI	GCGC	2 cut(s)	92, 521
Hin1II	CATG	4 cut(s)	142, 414, 484, 696
Hin6I	GCGC	2 cut(s)	90, 519
HinP1I	GCGC	2 cut(s)	90, 519
HinfI	GANTC	2 cut(s)	263, 310
HpaII	CCGG	5 cut(s)	159, 198, 239, 595, 654
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	188, 620
HpyAV	CCTTC	3 cut(s)	55, 60, 481
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 89, 163, 168, 296, 608
HpyF3I	CTNAG	2 cut(s)	394, 495
Hsp92II	CATG	4 cut(s)	142, 414, 484, 696
HspAI	GCGC	2 cut(s)	90, 519
KroI	GCCGGC	1 cut(s)	594
KroNI	GCCGGC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	582, 688
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	2 cut(s)	352, 489
LweI	GCATC	2 cut(s)	39, 144
MaeI	CTAG	2 cut(s)	227, 314
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	584, 690
MboI	GATC	2 cut(s)	582, 688
MboII	GAAGA	2 cut(s)	511, 514
MhlI	GDGCHC	3 cut(s)	168, 273, 419
MluCI	AATT	3 cut(s)	77, 429, 443
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	33, 642
MnlI	CCTC	9 cut(s)	68, 76, 136, 183, 191, 246, 316, 371, 556
MroNI	GCCGGC	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	17, 358
MspI	CCGG	5 cut(s)	159, 198, 239, 595, 654
MspR9I	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
MvaI	CCWGG	5 cut(s)	130, 306, 375, 513, 648
MwoI	GCNNNNNNNGC	6 cut(s)	41, 89, 163, 168, 296, 608
NaeI	GCCGGC	1 cut(s)	596
NciI	CCSGG	2 cut(s)	159, 198
NcoI	CCATGG	2 cut(s)	410, 692
NdeII	GATC	2 cut(s)	582, 688
NgoMIV	GCCGGC	1 cut(s)	594
NlaIII	CATG	4 cut(s)	142, 414, 484, 696
NlaIV	GGNNCC	5 cut(s)	115, 190, 492, 549, 652
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	367, 479
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	2 cut(s)	490, 547
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	490, 547
Psp6I	CCWGG	5 cut(s)	128, 304, 373, 511, 646
PspGI	CCWGG	5 cut(s)	128, 304, 373, 511, 646
PspN4I	GGNNCC	5 cut(s)	115, 190, 492, 549, 652
PspPI	GGNCC	3 cut(s)	490, 547, 656
PspPPI	RGGWCCY	2 cut(s)	490, 547
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	318, 509, 644
RsaNI	GTAC	3 cut(s)	317, 508, 643
RseI	CAYNNNNRTG	2 cut(s)	17, 358
Rsr2I	CGGWCCG	1 cut(s)	656
RsrII	CGGWCCG	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	366, 478
Sau3AI	GATC	2 cut(s)	582, 688
Sau96I	GGNCC	3 cut(s)	490, 547, 656
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	7 cut(s)	130, 159, 198, 306, 375, 513, 648
SduI	GDGCHC	3 cut(s)	168, 273, 419
SetI	ASST	9 cut(s)	26, 102, 109, 134, 183, 257, 273, 392, 576
SfaNI	GCATC	2 cut(s)	39, 144
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	490, 547, 656
SmiMI	CAYNNNNRTG	2 cut(s)	17, 358
Sse9I	AATT	3 cut(s)	77, 429, 443
SsiI	CCGC	3 cut(s)	144, 169, 192
SspMI	CTAG	2 cut(s)	227, 314
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	7 cut(s)	128, 157, 196, 304, 373, 511, 646
StyI	CCWWGG	4 cut(s)	410, 531, 543, 692
TaaI	ACNGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	183, 441, 561
TasI	AATT	3 cut(s)	77, 429, 443
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	365, 477
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	490, 547, 656
XapI	RAATTY	2 cut(s)	77, 443
XspI	CTAG	2 cut(s)	227, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.