Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

25530799 .. 25532598

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCAACACTTTGATGAGCTGTGGCATCGCCACCACTGCCTTCCCCTCAGTCCTGTCATCCTCAAAGTCTAAATTTGCGACCAGTGCAGTCCAGCTCCCAAGTGTTGGTGCCAATGCCTCCTCAAGGTTCTCCATGTCAGCCGACTGGATGCCCGGCGAGCCCCGGCCTCCTTACCTTGATGGCTCTGCACCCGGTGACTTTGGATTTGACCCACTTCGGCTAGGAGAAGTGCCCGAGAACTTGGAGAGGTTCAAGGAGTCTGAGCTCATTCACTGCAGATGGGCAATGCTTGCTGTACCAGGGATTCTTGTACCAGAGGCTTTGGGATTGGGCAACTGGGTAAAAGCACAAGAGTGGGCTGCCGTTCCAGGAGGTCAAGCGACCTACTTAGGCAACCCAGTTCCATGGGGCACTTTGCCTACAATTTTGGTCATCGAATTCCTTTCCATTGCCTTTGTAGAACACCAACGCAGCATGGAGAAGGACCCTGAGAAGAAGAAGTACCCTGGTGGCGCTTTTGACCCCTTGGGCTACTCCAAGGACCCCAAGAAGTTCGAGGAGTACAAAGTCAAAGAGATAAAAAATGGCCGGCTCGCGTTGTTGGCTTTCGTTGGGTTTGTTGTTCAACAATCGGCGTACCCTGGCACAGGACCATTGGAGAACCTGGCTACTCACTTGGCTGACCCATGGCACAACAACATCGGGGATGTCCTCATCCCCAAAGGGATTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

248

Amino Acids

26.72

Weight (kDa)

5.85

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	58 - 212	1.3e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccII	CGCG	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	77, 443
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	5 cut(s)	303, 318, 509, 569, 644
AfiI	CCNNNNNNNGG	3 cut(s)	110, 129, 653
AgsI	TTSAA	2 cut(s)	259, 632
AjnI	CCWGG	5 cut(s)	304, 373, 511, 646, 669
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	24, 100, 271
AluI	AGCT	3 cut(s)	24, 100, 271
Alw21I	GWGCWC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	170, 592
ApeKI	GCWGC	2 cut(s)	365, 477
ApoI	RAATTY	2 cut(s)	77, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	3 cut(s)	490, 547, 656
AsuC2I	CCSGG	3 cut(s)	159, 169, 198
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	490, 547, 656
BaeGI	GKGCMC	2 cut(s)	240, 419
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	168, 273
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	352, 489
BccI	CCATC	2 cut(s)	179, 279
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	5 cut(s)	306, 375, 513, 648, 671
BcnI	CCSGG	3 cut(s)	159, 169, 198
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	522
BisI	GCNGC	2 cut(s)	366, 478
BlsI	GCNGC	2 cut(s)	367, 479
Bme1390I	CCNGG	8 cut(s)	159, 169, 198, 306, 375, 513, 648, 671
Bme18I	GGWCC	3 cut(s)	490, 547, 656
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	490, 547, 656
BmiI	GGNNCC	3 cut(s)	115, 492, 549
BmrFI	CCNGG	8 cut(s)	159, 169, 198, 306, 375, 513, 648, 671
BmrI	ACTGGG	2 cut(s)	352, 398
BmsI	GCATC	2 cut(s)	39, 144
BmuI	ACTGGG	2 cut(s)	352, 398
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	3 cut(s)	159, 169, 198
BsaJI	CCNNGG	8 cut(s)	167, 305, 410, 511, 531, 543, 646, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 129, 653
Bse118I	RCCGGY	1 cut(s)	594
Bse1I	ACTGG	4 cut(s)	87, 155, 347, 404
Bse3DI	GCAATG	2 cut(s)	297, 453
BseBI	CCWGG	5 cut(s)	306, 375, 513, 648, 671
BseDI	CCNNGG	8 cut(s)	167, 305, 410, 511, 531, 543, 646, 692
BseGI	GGATG	4 cut(s)	62, 159, 718, 720
BseLI	CCNNNNNNNGG	3 cut(s)	110, 129, 653
BseMI	GCAATG	2 cut(s)	297, 453
BseMII	CTCAG	3 cut(s)	66, 258, 486
BseNI	ACTGG	4 cut(s)	87, 155, 347, 404
BseRI	GAGGAG	2 cut(s)	115, 578
BseSI	GKGCMC	2 cut(s)	240, 419
BseXI	GCAGC	2 cut(s)	352, 489
BsgI	GTGCAG	2 cut(s)	111, 177
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	2 cut(s)	172, 594
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	159, 169, 198, 595
BslI	CCNNNNNNNGG	3 cut(s)	110, 129, 653
BsnI	GGCC	2 cut(s)	172, 594
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	168, 240, 273, 419
Bsp19I	CCATGG	2 cut(s)	410, 692
BspANI	GGCC	2 cut(s)	172, 594
BspCNI	CTCAG	3 cut(s)	65, 259, 487
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	3 cut(s)	115, 492, 549
BspMAI	CTGCAG	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	297, 453
BsrFI	RCCGGY	1 cut(s)	594
BsrI	ACTGG	4 cut(s)	87, 155, 347, 404
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	8 cut(s)	167, 305, 410, 511, 531, 543, 646, 692
BssT1I	CCWWGG	4 cut(s)	410, 531, 543, 692
Bst2UI	CCWGG	5 cut(s)	306, 375, 513, 648, 671
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	164, 297, 596, 600
BstDEI	CTNAG	4 cut(s)	52, 267, 394, 495
BstDSI	CCRYGG	2 cut(s)	410, 692
BstENI	CCTNNNNNAGG	2 cut(s)	127, 651
BstF5I	GGATG	4 cut(s)	62, 159, 718, 720
BstFNI	CGCG	1 cut(s)	602
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
BstNI	CCWGG	5 cut(s)	306, 375, 513, 648, 671
BstSCI	CCNGG	8 cut(s)	157, 167, 196, 304, 373, 511, 646, 669
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	240, 419
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	2 cut(s)	352, 489
BstXI	CCANNNNNNTGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	172, 594
BtgI	CCRYGG	2 cut(s)	410, 692
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	62, 159, 718, 720
BtsI	GCAGTG	2 cut(s)	39, 277
BtsIMutI	CAGTG	3 cut(s)	39, 94, 277
Cac8I	GCNNGC	4 cut(s)	164, 297, 596, 600
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	490, 547, 656
Csp6I	GTAC	5 cut(s)	302, 317, 508, 568, 643
CviAII	CATG	4 cut(s)	139, 411, 481, 693
CviQI	GTAC	5 cut(s)	302, 317, 508, 568, 643
DdeI	CTNAG	4 cut(s)	52, 267, 394, 495
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	4 cut(s)	410, 531, 543, 692
Eco24I	GRGCYC	2 cut(s)	168, 273
Eco47I	GGWCC	3 cut(s)	490, 547, 656
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	2 cut(s)	127, 651
EcoO109I	RGGNCCY	2 cut(s)	490, 547
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	5 cut(s)	304, 373, 511, 646, 669
EcoT14I	CCWWGG	4 cut(s)	410, 531, 543, 692
EcoT38I	GRGCYC	2 cut(s)	168, 273
ErhI	CCWWGG	4 cut(s)	410, 531, 543, 692
FaeI	CATG	4 cut(s)	142, 414, 484, 696
FaiI	YATR	4 cut(s)	140, 412, 482, 694
FatI	CATG	4 cut(s)	138, 410, 480, 692
Fnu4HI	GCNGC	2 cut(s)	366, 478
FokI	GGATG	4 cut(s)	49, 166, 707, 725
FriOI	GRGCYC	2 cut(s)	168, 273
Fsp4HI	GCNGC	2 cut(s)	366, 478
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	366, 478
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	172, 594
HapII	CCGG	4 cut(s)	159, 169, 198, 595
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	142, 414, 484, 696
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	263, 310
HpaII	CCGG	4 cut(s)	159, 169, 198, 595
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	55, 481
HpyCH4V	TGCA	3 cut(s)	92, 194, 282
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
HpyF3I	CTNAG	4 cut(s)	52, 267, 394, 495
Hsp92II	CATG	4 cut(s)	142, 414, 484, 696
HspAI	GCGC	1 cut(s)	519
KroI	GCCGGC	1 cut(s)	594
KroNI	GCCGGC	1 cut(s)	596
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	2 cut(s)	352, 489
LweI	GCATC	2 cut(s)	39, 144
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	2 cut(s)	511, 514
MhlI	GDGCHC	4 cut(s)	168, 240, 273, 419
MluCI	AATT	3 cut(s)	77, 429, 443
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	17, 358
MspI	CCGG	4 cut(s)	159, 169, 198, 595
MspR9I	CCNGG	8 cut(s)	159, 169, 198, 306, 375, 513, 648, 671
MvaI	CCWGG	5 cut(s)	306, 375, 513, 648, 671
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	5 cut(s)	41, 89, 163, 296, 608
NaeI	GCCGGC	1 cut(s)	596
NciI	CCSGG	3 cut(s)	159, 169, 198
NcoI	CCATGG	2 cut(s)	410, 692
NgoMIV	GCCGGC	1 cut(s)	594
NlaIII	CATG	4 cut(s)	142, 414, 484, 696
NlaIV	GGNNCC	3 cut(s)	115, 492, 549
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	367, 479
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	2 cut(s)	490, 547
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	490, 547
Psp6I	CCWGG	5 cut(s)	304, 373, 511, 646, 669
PspGI	CCWGG	5 cut(s)	304, 373, 511, 646, 669
PspN4I	GGNNCC	3 cut(s)	115, 492, 549
PspPI	GGNCC	3 cut(s)	490, 547, 656
PspPPI	RGGWCCY	2 cut(s)	490, 547
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	5 cut(s)	303, 318, 509, 569, 644
RsaNI	GTAC	5 cut(s)	302, 317, 508, 568, 643
RseI	CAYNNNNRTG	2 cut(s)	17, 358
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	366, 478
Sau96I	GGNCC	3 cut(s)	490, 547, 656
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	8 cut(s)	159, 169, 198, 306, 375, 513, 648, 671
SduI	GDGCHC	4 cut(s)	168, 240, 273, 419
SetI	ASST	9 cut(s)	26, 102, 134, 183, 257, 273, 382, 392, 672
SfaNI	GCATC	2 cut(s)	39, 144
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	490, 547, 656
SmiMI	CAYNNNNRTG	2 cut(s)	17, 358
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	77, 429, 443
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	8 cut(s)	157, 167, 196, 304, 373, 511, 646, 669
StyI	CCWWGG	4 cut(s)	410, 531, 543, 692
TaqI	TCGA	2 cut(s)	441, 561
TasI	AATT	3 cut(s)	77, 429, 443
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	3 cut(s)	46, 94, 284
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	365, 477
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	3 cut(s)	46, 94, 284
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	490, 547, 656
XagI	CCTNNNNNAGG	2 cut(s)	127, 651
XapI	RAATTY	2 cut(s)	77, 443
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.