Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

20381460 .. 20383878

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAGAAGAAAGGTGTCCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAAGCAATTGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGCTGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGAAGGTTACTATCTGCGTTGATTTGTGAATACTTGGACTGGGCACAACTTAATCACACGCTCATAGTTTATCAACCTGAAAGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGTTTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTCTTGAAGTTTGAGAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAACAGAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAGCTTACCTCCTCAACGAAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTTGTCTACATCTGGGTACAGAAAAGATGAATTCAACTGGAGACAAGGTAACCAAGATACACATGAAGAGGTAACAAGAGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTCGGAACTTAACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

260

Amino Acids

29.33

Weight (kDa)

5.37

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FOP_dimer	PF09398	62 - 137	3e-06	FOP N terminal dimerisation domain
LisH_2	PF16045	78 - 104	1.2e-10	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	602
AccII	CGCG	1 cut(s)	339
AciI	CCGC	2 cut(s)	158, 683
AclWI	GGATC	2 cut(s)	36, 76
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	201, 663
AfaI	GTAC	1 cut(s)	614
AgsI	TTSAA	6 cut(s)	113, 122, 413, 424, 462, 631
AluBI	AGCT	8 cut(s)	94, 167, 180, 202, 367, 540, 677, 703
AluI	AGCT	8 cut(s)	94, 167, 180, 202, 367, 540, 677, 703
Alw21I	GWGCWC	2 cut(s)	96, 369
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	36, 76
AoxI	GGCC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	155, 389
AsuC2I	CCSGG	2 cut(s)	86, 595
AvaII	GGWCC	2 cut(s)	155, 389
BaeGI	GKGCMC	1 cut(s)	265
BanII	GRGCYC	2 cut(s)	96, 369
Bbv12I	GWGCWC	2 cut(s)	96, 369
BccI	CCATC	2 cut(s)	19, 746
BcnI	CCSGG	2 cut(s)	86, 595
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	1 cut(s)	689
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	86, 595
Bme18I	GGWCC	2 cut(s)	155, 389
BmgT120I	GGNCC	2 cut(s)	155, 389
BmrFI	CCNGG	2 cut(s)	86, 595
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	578, 587
BmuI	ACTGGG	1 cut(s)	268
BoxI	GACNNNNGTC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	147, 655
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	3 cut(s)	17, 518, 558
BpuMI	CCSGG	2 cut(s)	86, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	263, 638
BseGI	GGATG	1 cut(s)	757
BseMII	CTCAG	2 cut(s)	81, 321
BseNI	ACTGG	2 cut(s)	263, 638
BseRI	GAGGAG	2 cut(s)	504, 537
BseSI	GKGCMC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	559
BsiHKAI	GWGCWC	2 cut(s)	96, 369
BsiSI	CCGG	3 cut(s)	85, 560, 594
BsmAI	GTCTC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	96, 265, 369
Bsp143I	GATC	4 cut(s)	28, 81, 187, 521
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	158, 683
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	82, 322
BspFNI	CGCG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	36, 76
BspQI	GCTCTTC	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	263, 638
BssAI	RCCGGY	1 cut(s)	559
BssMI	GATC	4 cut(s)	28, 81, 187, 521
Bst6I	CTCTTC	3 cut(s)	120, 583, 657
BstDEI	CTNAG	3 cut(s)	78, 90, 330
BstEII	GGTNACC	1 cut(s)	644
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	4 cut(s)	31, 84, 190, 524
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	4 cut(s)	28, 81, 187, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 683
BstPAI	GACNNNNGTC	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	84, 593
BstSFI	CTRYAG	1 cut(s)	698
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	28, 81
BstYI	RGATCY	2 cut(s)	28, 81
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	757
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	155, 389
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	4 cut(s)	206, 436, 448, 659
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	3 cut(s)	78, 90, 330
DpnI	GATC	4 cut(s)	30, 83, 189, 523
DpnII	GATC	4 cut(s)	28, 81, 187, 521
Eam1104I	CTCTTC	3 cut(s)	120, 583, 657
EarI	CTCTTC	3 cut(s)	120, 583, 657
Ecl136II	GAGCTC	2 cut(s)	94, 367
Eco24I	GRGCYC	2 cut(s)	96, 369
Eco47I	GGWCC	2 cut(s)	155, 389
Eco53kI	GAGCTC	2 cut(s)	94, 367
Eco57I	CTGAAG	2 cut(s)	201, 663
Eco91I	GGTNACC	1 cut(s)	644
EcoICRI	GAGCTC	2 cut(s)	94, 367
EcoO65I	GGTNACC	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	626
EcoT38I	GRGCYC	2 cut(s)	96, 369
FaeI	CATG	4 cut(s)	209, 439, 451, 662
FaiI	YATR	6 cut(s)	12, 207, 284, 437, 449, 660
FatI	CATG	4 cut(s)	205, 435, 447, 658
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	2 cut(s)	96, 369
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	1 cut(s)	684
GsuI	CTGGAG	2 cut(s)	147, 655
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	3 cut(s)	85, 560, 594
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	4 cut(s)	209, 439, 451, 662
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	317, 470, 482, 500
HpaII	CCGG	3 cut(s)	85, 560, 594
Hpy166II	GTNNAC	2 cut(s)	389, 603
Hpy188I	TCNGA	5 cut(s)	331, 475, 535, 583, 720
Hpy188III	TCNNGA	6 cut(s)	34, 219, 401, 410, 421, 504
Hpy8I	GTNNAC	2 cut(s)	389, 603
HpyAV	CCTTC	7 cut(s)	146, 216, 225, 407, 407, 549, 764
HpyCH4V	TGCA	3 cut(s)	101, 194, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 683
HpyF3I	CTNAG	3 cut(s)	78, 90, 330
Hsp92II	CATG	4 cut(s)	209, 439, 451, 662
HspAI	GCGC	1 cut(s)	686
Kzo9I	GATC	4 cut(s)	28, 81, 187, 521
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	99
LweI	GCATC	2 cut(s)	578, 587
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	5 cut(s)	43, 225, 333, 644, 667
MalI	GATC	4 cut(s)	30, 83, 189, 523
MboI	GATC	4 cut(s)	28, 81, 187, 521
MboII	GAAGA	7 cut(s)	73, 134, 137, 600, 674, 776, 779
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	2 cut(s)	28, 81
MhlI	GDGCHC	3 cut(s)	96, 265, 369
MluCI	AATT	3 cut(s)	117, 304, 626
MlyI	GAGTC	2 cut(s)	491, 509
MseI	TTAA	3 cut(s)	270, 345, 725
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	3 cut(s)	85, 560, 594
MspR9I	CCNGG	2 cut(s)	86, 595
MunI	CAATTG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	575, 683
NciI	CCSGG	2 cut(s)	86, 595
NdeII	GATC	4 cut(s)	28, 81, 187, 521
NlaIII	CATG	4 cut(s)	209, 439, 451, 662
NmuCI	GTSAC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	583
PfeI	GAWTC	2 cut(s)	317, 470
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	490, 508
PpsI	GAGTC	2 cut(s)	490, 508
PshAI	GACNNNNGTC	1 cut(s)	41
Psp124BI	GAGCTC	2 cut(s)	96, 369
PspEI	GGTNACC	1 cut(s)	644
PspPI	GGNCC	2 cut(s)	155, 389
PsuI	RGATCY	2 cut(s)	28, 81
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SacI	GAGCTC	2 cut(s)	96, 369
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	270, 345, 725
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	4 cut(s)	28, 81, 187, 521
Sau96I	GGNCC	2 cut(s)	155, 389
SchI	GAGTC	2 cut(s)	491, 509
ScrFI	CCNGG	2 cut(s)	86, 595
SduI	GDGCHC	3 cut(s)	96, 265, 369
SfaNI	GCATC	2 cut(s)	578, 587
SfcI	CTRYAG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	155, 389
SmlI	CTYRAG	3 cut(s)	32, 497, 573
SmoI	CTYRAG	3 cut(s)	32, 497, 573
Sse9I	AATT	3 cut(s)	117, 304, 626
SsiI	CCGC	2 cut(s)	158, 683
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	2 cut(s)	96, 369
StyD4I	CCNGG	2 cut(s)	84, 593
TaqI	TCGA	2 cut(s)	49, 402
TasI	AATT	3 cut(s)	117, 304, 626
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	317, 470
Tru1I	TTAA	3 cut(s)	270, 345, 725
Tru9I	TTAA	3 cut(s)	270, 345, 725
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	165, 194, 639, 675, 777
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	155, 389
XapI	RAATTY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.