Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

20035817 .. 20038230

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17480.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACTCTCGTCACTCGCACCCTCGAGAAGAAGGGCGTACTCGCCAAGATCCGGGCTGAGTTGAGAGCAAGTGTGTTTGAGGCAATTGAGGAGGAGGACAAGGTCATCGAGAAAGACGAAGGCTTGCCTCCAGCATTGCTTGGTAGCTGCAACGATCGAGCTAAACAGCTCCACGCTTCTCCTTCGGGAAGGTTGCTTACAGCACTGATATGCGAGTACTTAGACTGGGCTCAACTAAACCACACGCTAAAAGTTTATCAGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAAGCTGAGTTGAAGGACTTTAGTAGCAAGAATGGATATGATCTTAACCGAAACGGAGATAGTGGTCCTTTGCTTTTGGATGTGCTTGAAGGATTTTTGAAATTTGAGAATCTATCTCAATCAAGGGGTACTGGAAGGAGGCTAACGACTTCAGAAACAGAATCCCTGTCCAATTTAGATTCTCGCAATATGAGAAGACCTTCTTCATCATCTGTTGCTGGTGGGCTACCTCCACTAGGAAGGCCTGGTGCATCTTCCCAGTCATCTGATCGAAGAGGTGGGTCATCCATGTCTGGCTACAGGAAAGATGACTACAGCTATAGATACGACATTGATGAAAGTCCAGAGGATGTCATTCGAGCTTCAAGTGCGATGGAAAACCTCCAGTTGGATAGAAAAGCTCGCAATCTAACAACATCTTGGCGGCACGCAGGAGATGGAATTAGTGAGGATGACGGCAGGGCTGACCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

267

Amino Acids

29.69

Weight (kDa)

5.33

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	748
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	3 cut(s)	72, 251, 454
AfiI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
AgsI	TTSAA	4 cut(s)	337, 413, 424, 690
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	7 cut(s)	180, 194, 202, 329, 642, 686, 725
AluI	AGCT	7 cut(s)	180, 194, 202, 329, 642, 686, 725
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	56, 296
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	28, 389
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	2 cut(s)	56, 296
AvaII	GGWCC	2 cut(s)	28, 389
BanII	GRGCYC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	3 cut(s)	19, 691, 755
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	3 cut(s)	622, 637, 643
BisI	GCNGC	2 cut(s)	181, 749
BlsI	GCNGC	2 cut(s)	182, 750
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	86, 570
Bme18I	GGWCC	2 cut(s)	28, 389
BmeT110I	CYCGRG	2 cut(s)	56, 296
BmgT120I	GGNCC	2 cut(s)	28, 389
BmrFI	CCNGG	2 cut(s)	86, 570
BmrI	ACTGGG	2 cut(s)	268, 577
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	2 cut(s)	268, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
BpmI	CTGGAG	2 cut(s)	147, 692
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 560, 712
Bse1I	ACTGG	4 cut(s)	263, 460, 583, 709
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	570
BseGI	GGATG	4 cut(s)	409, 608, 679, 781
BseLI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	81, 321
BseNI	ACTGG	4 cut(s)	263, 460, 583, 709
BseRI	GAGGAG	2 cut(s)	137, 140
BseXI	GCAGC	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	56, 296
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	2 cut(s)	56, 296
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	81, 187, 364, 592
BspACI	CCGC	1 cut(s)	748
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	2 cut(s)	82, 322
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	167
BsrI	ACTGG	4 cut(s)	263, 460, 583, 709
BssMI	GATC	4 cut(s)	81, 187, 364, 592
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	570
Bst6I	CTCTTC	1 cut(s)	592
BstC8I	GCNNGC	3 cut(s)	158, 727, 753
BstDEI	CTNAG	3 cut(s)	90, 253, 330
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	4 cut(s)	409, 608, 679, 781
BstKTI	GATC	4 cut(s)	84, 190, 367, 595
BstMBI	GATC	4 cut(s)	81, 187, 364, 592
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	570
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	84, 568
BstSFI	CTRYAG	3 cut(s)	622, 637, 643
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	710
BtsCI	GGATG	4 cut(s)	409, 608, 679, 781
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	158, 727, 753
Cfr13I	GGNCC	2 cut(s)	28, 389
Csp6I	GTAC	3 cut(s)	71, 250, 453
CviAII	CATG	1 cut(s)	613
CviQI	GTAC	3 cut(s)	71, 250, 453
DdeI	CTNAG	3 cut(s)	90, 253, 330
DpnI	GATC	4 cut(s)	83, 189, 366, 594
DpnII	GATC	4 cut(s)	81, 187, 364, 592
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	28, 389
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	2 cut(s)	56, 296
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	1 cut(s)	616
FaiI	YATR	5 cut(s)	244, 363, 515, 614, 645
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	181, 749
FokI	GGATG	4 cut(s)	416, 595, 686, 788
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	181, 749
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	2 cut(s)	181, 749
GsuI	CTGGAG	2 cut(s)	147, 692
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	1 cut(s)	616
HinfI	GANTC	5 cut(s)	37, 317, 433, 485, 503
HpaII	CCGG	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	478, 592
Hpy188III	TCNNGA	5 cut(s)	34, 58, 142, 219, 668
HpyAV	CCTTC	9 cut(s)	58, 146, 216, 225, 331, 407, 453, 534, 558
HpyCH4V	TGCA	3 cut(s)	183, 310, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	3 cut(s)	90, 253, 330
Hsp92II	CATG	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	81, 187, 364, 592
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	83, 189, 366, 594
MboI	GATC	4 cut(s)	81, 187, 364, 592
MboII	GAAGA	5 cut(s)	73, 519, 531, 570, 609
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	5 cut(s)	117, 304, 425, 496, 765
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	86, 570
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	81, 187, 364, 592
NlaIII	CATG	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	4 cut(s)	317, 433, 485, 503
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	182, 750
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	28, 389
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	3 cut(s)	72, 251, 454
RsaNI	GTAC	3 cut(s)	71, 250, 453
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	181, 749
Sau3AI	GATC	4 cut(s)	81, 187, 364, 592
Sau96I	GGNCC	2 cut(s)	28, 389
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	86, 570
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	3 cut(s)	622, 637, 643
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	28, 389
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	32, 56
SmoI	CTYRAG	2 cut(s)	32, 56
Sse9I	AATT	5 cut(s)	117, 304, 425, 496, 765
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	1 cut(s)	748
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	2 cut(s)	84, 568
TaqI	TCGA	5 cut(s)	57, 141, 190, 595, 682
TasI	AATT	5 cut(s)	117, 304, 425, 496, 765
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	4 cut(s)	317, 433, 485, 503
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	519, 675
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	28, 389
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.