Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

57763065 .. 57766079

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACCCTCGTCACTCGGACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCCGGGCTGAGCTGAGAGCAAGTGTGTTCGAGGCAATTGAAGAGGAGGACAAGGTCATTGAGAAAGATGAAGGCTTGCCTCCGGCGCTATTGGGCAGCTGCAACGATCGTGCTAAGCAGCTCCATGCTTCTCCTTCGGGAAGGTTGCTTACGGCATTGATATGCGAATACTTAGACTGGGCGCAGCTGAGCCACACGCTAAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAATCTGAGTTGAAGGACTTCAGTAACAAGAATGGATATGACCTTAACAGAAATGGGGATAGTGGTCCCTTGCTTTTGGATGTGCTTGAAGGATTTTTGAAGTTTGAGAATTTATCTCAAACAAGGGGTACTGGAAGGAGGCTGACTACTTCAGAAGCGGAGTCCTTATCCAATTTAGAGTCTCGGAACATGCGAAGACCTTCTTCATCATCTGTTGCTGGAGGCCTACCTCCACTGGGAAGGCCTGGTACTGCTTCCCAGTCATCTGATCGAAGAGGTGGGTCCTCCATGTCTAGCCACAGGAAAGATGACTACAACTGGAGATATGACAATGAAGAACTTCCGGAAGATGTCCTCCGAGCTTCAAGTGCCATGGAAAACCTTCAATTGGATAAAAAAGCTCGAAATCTAACTACATCCTGGCGGCACGCCGGAGATGGAAGTAGCGAGGATGACAGCAGGTCAGACCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

5.44

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	77 - 103	1e-12	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	774
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	2 cut(s)	482, 748
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	328, 459
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	454, 574
AfiI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
AgsI	TTSAA	6 cut(s)	122, 337, 413, 424, 690, 710
AhdI	GACNNNNNGTC	1 cut(s)	784
AjnI	CCWGG	2 cut(s)	568, 743
AluBI	AGCT	6 cut(s)	94, 180, 202, 268, 686, 725
AluI	AGCT	6 cut(s)	94, 180, 202, 268, 686, 725
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	56, 296
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	2 cut(s)	547, 566
ApeKI	GCWGC	4 cut(s)	177, 180, 199, 265
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	4 cut(s)	341, 523, 663, 705
AspLEI	GCGC	2 cut(s)	169, 265
AspS9I	GGNCC	4 cut(s)	28, 51, 389, 606
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	2 cut(s)	56, 296
AvaII	GGWCC	4 cut(s)	28, 51, 389, 606
BarI	GAAGNNNNNNTAC	4 cut(s)	214, 246, 556, 588
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	4 cut(s)	167, 189, 211, 277
BccI	CCATC	2 cut(s)	19, 755
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	570, 745
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	774
BisI	GCNGC	5 cut(s)	178, 181, 200, 266, 749
BlpI	GCTNAGC	3 cut(s)	90, 195, 269
BlsI	GCNGC	5 cut(s)	179, 182, 201, 267, 750
Bme1390I	CCNGG	3 cut(s)	86, 570, 745
Bme18I	GGWCC	4 cut(s)	28, 51, 389, 606
BmeRI	GACNNNNNGTC	1 cut(s)	784
BmeT110I	CYCGRG	2 cut(s)	56, 296
BmgT120I	GGNCC	4 cut(s)	28, 51, 389, 606
BmiI	GGNNCC	3 cut(s)	53, 391, 607
BmrFI	CCNGG	3 cut(s)	86, 570, 745
BmrI	ACTGGG	3 cut(s)	268, 569, 577
BmuI	ACTGGG	3 cut(s)	268, 569, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
BpmI	CTGGAG	2 cut(s)	564, 664
Bpu1102I	GCTNAGC	3 cut(s)	90, 195, 269
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 560, 712
Bse1I	ACTGG	5 cut(s)	263, 460, 564, 583, 647
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	570, 745
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	3 cut(s)	409, 740, 781
BseLI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
BseMII	CTCAG	4 cut(s)	81, 86, 260, 321
BseNI	ACTGG	5 cut(s)	263, 460, 564, 583, 647
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	167, 189, 211, 277
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	549, 568
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	56, 296
BsiSI	CCGG	4 cut(s)	85, 164, 668, 756
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	3 cut(s)	84, 560, 712
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	549, 568
BsoBI	CYCGRG	2 cut(s)	56, 296
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	81, 187, 592
Bsp1720I	GCTNAGC	3 cut(s)	90, 195, 269
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	2 cut(s)	482, 748
BspANI	GGCC	2 cut(s)	549, 568
BspCNI	CTCAG	4 cut(s)	82, 87, 261, 322
BspEI	TCCGGA	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	53, 391, 607
BspMI	ACCTGC	1 cut(s)	774
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	5 cut(s)	263, 460, 564, 583, 647
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	81, 187, 592
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	570, 745
Bst6I	CTCTTC	2 cut(s)	117, 592
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	158, 753
BstDEI	CTNAG	6 cut(s)	90, 95, 195, 253, 269, 330
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	3 cut(s)	409, 740, 781
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 265
BstKTI	GATC	3 cut(s)	84, 190, 595
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	3 cut(s)	81, 187, 592
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 692
BstNI	CCWGG	2 cut(s)	570, 745
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	84, 568, 743
BstV1I	GCAGC	4 cut(s)	167, 189, 211, 277
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	549, 568
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	3 cut(s)	409, 740, 781
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	774
Cac8I	GCNNGC	2 cut(s)	158, 753
CfoI	GCGC	2 cut(s)	169, 265
Cfr13I	GGNCC	4 cut(s)	28, 51, 389, 606
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	453, 573
CviAII	CATG	4 cut(s)	206, 514, 613, 697
CviQI	GTAC	2 cut(s)	453, 573
DdeI	CTNAG	6 cut(s)	90, 95, 195, 253, 269, 330
DpnI	GATC	3 cut(s)	83, 189, 594
DpnII	GATC	3 cut(s)	81, 187, 592
DriI	GACNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	117, 592
Eam1105I	GACNNNNNGTC	1 cut(s)	784
EarI	CTCTTC	2 cut(s)	117, 592
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	2 cut(s)	549, 568
Eco47I	GGWCC	4 cut(s)	28, 51, 389, 606
Eco57I	CTGAAG	2 cut(s)	328, 459
Eco88I	CYCGRG	2 cut(s)	56, 296
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	568, 743
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	4 cut(s)	209, 517, 616, 700
FaiI	YATR	7 cut(s)	207, 244, 363, 515, 614, 651, 698
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	205, 513, 612, 696
Fnu4HI	GCNGC	5 cut(s)	178, 181, 200, 266, 749
FokI	GGATG	3 cut(s)	416, 727, 788
Fsp4HI	GCNGC	5 cut(s)	178, 181, 200, 266, 749
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	168, 264
GluI	GCNGC	5 cut(s)	178, 181, 200, 266, 749
GsuI	CTGGAG	2 cut(s)	564, 664
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	549, 568
HapII	CCGG	4 cut(s)	85, 164, 668, 756
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	169, 265
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	209, 517, 616, 700
Hin6I	GCGC	2 cut(s)	167, 263
HinP1I	GCGC	2 cut(s)	167, 263
HinfI	GANTC	3 cut(s)	317, 485, 503
HpaII	CCGG	4 cut(s)	85, 164, 668, 756
Hpy188I	TCNGA	7 cut(s)	51, 331, 478, 510, 592, 683, 790
Hpy188III	TCNNGA	4 cut(s)	34, 58, 219, 668
HpyCH4V	TGCA	2 cut(s)	183, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 692
HpyF3I	CTNAG	6 cut(s)	90, 95, 195, 253, 269, 330
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	209, 517, 616, 700
HspAI	GCGC	2 cut(s)	167, 263
Kpn2I	TCCGGA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	81, 187, 592
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	4 cut(s)	167, 189, 211, 277
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	43, 347
MalI	GATC	3 cut(s)	83, 189, 594
MboI	GATC	3 cut(s)	81, 187, 592
MboII	GAAGA	7 cut(s)	73, 134, 519, 531, 609, 671, 683
MfeI	CAATTG	2 cut(s)	117, 710
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	5 cut(s)	117, 304, 433, 496, 710
MlyI	GAGTC	2 cut(s)	494, 512
MroI	TCCGGA	1 cut(s)	667
MroXI	GAANNNNTTC	4 cut(s)	341, 523, 663, 705
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
MspA1I	CMGCKG	2 cut(s)	180, 268
MspI	CCGG	4 cut(s)	85, 164, 668, 756
MspR9I	CCNGG	3 cut(s)	86, 570, 745
MunI	CAATTG	2 cut(s)	117, 710
MvaI	CCWGG	2 cut(s)	570, 745
MwoI	GCNNNNNNNGC	2 cut(s)	166, 692
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	3 cut(s)	81, 187, 592
NlaIII	CATG	4 cut(s)	209, 517, 616, 700
NlaIV	GGNNCC	3 cut(s)	53, 391, 607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	56
PceI	AGGCCT	2 cut(s)	549, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	4 cut(s)	341, 523, 663, 705
PfeI	GAWTC	1 cut(s)	317
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	179, 182, 201, 267, 750
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	493, 511
PpsI	GAGTC	2 cut(s)	493, 511
PpuMI	RGGWCCY	1 cut(s)	606
PshAI	GACNNNNGTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	568, 743
PspGI	CCWGG	2 cut(s)	568, 743
PspN4I	GGNNCC	3 cut(s)	53, 391, 607
PspPI	GGNCC	4 cut(s)	28, 51, 389, 606
PspPPI	RGGWCCY	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	180, 268
RsaI	GTAC	2 cut(s)	454, 574
RsaNI	GTAC	2 cut(s)	453, 573
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	178, 181, 200, 266, 749
Sau3AI	GATC	3 cut(s)	81, 187, 592
Sau96I	GGNCC	4 cut(s)	28, 51, 389, 606
SchI	GAGTC	2 cut(s)	494, 512
ScrFI	CCNGG	3 cut(s)	86, 570, 745
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	4 cut(s)	28, 51, 389, 606
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	32, 56
SmoI	CTYRAG	2 cut(s)	32, 56
Sse9I	AATT	5 cut(s)	117, 304, 433, 496, 710
SseBI	AGGCCT	2 cut(s)	549, 568
SsiI	CCGC	2 cut(s)	482, 748
SspMI	CTAG	1 cut(s)	618
StuI	AGGCCT	2 cut(s)	549, 568
StyD4I	CCNGG	3 cut(s)	84, 568, 743
StyI	CCWWGG	1 cut(s)	696
TaqI	TCGA	4 cut(s)	57, 111, 595, 727
TasI	AATT	5 cut(s)	117, 304, 433, 496, 710
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	177, 180, 199, 265
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	165, 519, 672
TspRI	CASTG	1 cut(s)	564
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	4 cut(s)	28, 51, 389, 606
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	4 cut(s)	341, 523, 663, 705
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.