Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

24907714 .. 24910411

Gene Structure 2698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACTCTGGTCACTCGCACCCTTGAGAAGAAGGGCGTTCTGGCCAAGATCCGGGCTGAGTTGAGAGCAAGTGTGTTTGAGGCAATTGAAGAGGAGGACAAGGTCATCGAGAAAGAAGAAGGCTTGCCTCCGGCATTGCTTGGTAGCTGCAACGATCGTGCTAAACAGCTCCATGCTTCCCCTTCAGGAAGGTTGCTTACAGCACTAGTATGCGAATACTTAGACTGGGCGCAACTAAACCATACGCTAAAAGTGTATCAGCCTGAGTGTAATTTGCAAAAGGATTCTTGGAAAGCTGAGTTGAAGGACTTTAGTAGCAAGAATGGATATGATCTTAACCGAAATGGGGATAGTGGTCCTTTGCTTTTGGACGTGCTTGAAGGATTTTTGAAATTTGAGAATTTATCTCAAGCAAGGGGTACTGGAAGGAGGCTAGCTACTTCAGAAACAGAGTCCTTATCCAATTTAGACTCTCGCAACATGCGAAGACCTTCTTCATCATCTGTTGCTGGAGGGCTGCCTCCACTAGGAAGGCCTGGTGCGTCTTCCCAGTCATCTGATCGAAGAGGTGGGTCGTCCATGTCTAGCTACAGGAAAGATGACTACAATTGGAGATATGATAGTGATGAAAGTCCAGAGGATGTCATTCGAGCTTCAAGTGCCATGGAAAACCTTCAATTGGATAGAAAAGCTCGCAATCTAACCACATCGTGGCGGCATGCAGGCGATGGAATTAGCGAGGATGAGGGCAGGTCTGATCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

267

Amino Acids

29.73

Weight (kDa)

5.34

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	774
AccB7I	CCANNNNNTGG	1 cut(s)	744
AciI	CCGC	1 cut(s)	748
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	425, 433
AcuI	CTGAAG	2 cut(s)	201, 459
AdeI	CACNNNGTG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	5 cut(s)	84, 379, 560, 712, 744
AgsI	TTSAA	6 cut(s)	122, 337, 413, 424, 690, 710
AhlI	ACTAGT	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	7 cut(s)	180, 202, 329, 470, 621, 686, 725
AluI	AGCT	7 cut(s)	180, 202, 329, 470, 621, 686, 725
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	2 cut(s)	75, 566
ApeKI	GCWGC	2 cut(s)	180, 550
ApoI	RAATTY	2 cut(s)	425, 433
Asp700I	GAANNNNTTC	2 cut(s)	523, 705
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	28, 389
AsuC2I	CCSGG	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	28, 389
BalI	TGGCCA	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	526, 570
BbvI	GCAGC	2 cut(s)	167, 537
BccI	CCATC	2 cut(s)	19, 755
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	4 cut(s)	239, 467, 560, 618
BfmI	CTRYAG	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	181, 551, 749
BlsI	GCNGC	3 cut(s)	182, 552, 750
Bme1390I	CCNGG	2 cut(s)	86, 570
Bme18I	GGWCC	2 cut(s)	28, 389
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	28, 389
BmrFI	CCNGG	2 cut(s)	86, 570
BmrI	ACTGGG	2 cut(s)	268, 577
BmtI	GCTAGC	1 cut(s)	470
BmuI	ACTGGG	2 cut(s)	268, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	526, 570
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	3 cut(s)	17, 77, 426
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 379, 560, 712, 744
Bse1I	ACTGG	3 cut(s)	263, 460, 583
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	2 cut(s)	679, 781
BseLI	CCNNNNNNNGG	5 cut(s)	84, 379, 560, 712, 744
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	3 cut(s)	81, 288, 321
BseNI	ACTGG	3 cut(s)	263, 460, 583
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	167, 537
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	77, 568
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	85, 164
BslI	CCNNNNNNNGG	5 cut(s)	84, 379, 560, 712, 744
BsnI	GGCC	2 cut(s)	77, 568
Bsp143I	GATC	5 cut(s)	81, 187, 364, 592, 790
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	1 cut(s)	748
BspANI	GGCC	2 cut(s)	77, 568
BspCNI	CTCAG	3 cut(s)	82, 289, 322
BspMI	ACCTGC	1 cut(s)	774
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	263, 460, 583
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	5 cut(s)	81, 187, 364, 592, 790
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	570
Bst6I	CTCTTC	2 cut(s)	117, 592
BstC8I	GCNNGC	5 cut(s)	158, 468, 727, 753, 757
BstDEI	CTNAG	4 cut(s)	90, 253, 297, 330
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	679, 781
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	5 cut(s)	84, 190, 367, 595, 793
BstMBI	GATC	5 cut(s)	81, 187, 364, 592, 790
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	517, 755
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	84, 568
BstSFI	CTRYAG	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	167, 537
BstV2I	GAAGAC	2 cut(s)	526, 570
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	77, 568
BtgI	CCRYGG	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	774
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	679, 781
BveI	ACCTGC	1 cut(s)	774
Cac8I	GCNNGC	5 cut(s)	158, 468, 727, 753, 757
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	28, 389
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	5 cut(s)	206, 514, 613, 697, 752
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	4 cut(s)	90, 253, 297, 330
DpnI	GATC	5 cut(s)	83, 189, 366, 594, 792
DpnII	GATC	5 cut(s)	81, 187, 364, 592, 790
DraIII	CACNNNGTG	1 cut(s)	744
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	117, 592
EarI	CTCTTC	2 cut(s)	117, 592
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	28, 389
Eco57I	CTGAAG	2 cut(s)	201, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	5 cut(s)	209, 517, 616, 700, 755
FaiI	YATR	9 cut(s)	207, 244, 276, 363, 515, 614, 651, 698, 753
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	5 cut(s)	205, 513, 612, 696, 751
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	181, 551, 749
FokI	GGATG	2 cut(s)	686, 788
Fsp4HI	GCNGC	3 cut(s)	181, 551, 749
FspBI	CTAG	4 cut(s)	239, 467, 560, 618
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	181, 551, 749
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	77, 568
HapII	CCGG	2 cut(s)	85, 164
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	5 cut(s)	209, 517, 616, 700, 755
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	4 cut(s)	37, 317, 485, 503
HpaII	CCGG	2 cut(s)	85, 164
Hpy188I	TCNGA	4 cut(s)	478, 592, 790, 795
Hpy188III	TCNNGA	4 cut(s)	34, 142, 219, 668
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	183, 310, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	4 cut(s)	90, 253, 297, 330
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	209, 517, 616, 700, 755
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	5 cut(s)	81, 187, 364, 592, 790
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	2 cut(s)	167, 537
MaeI	CTAG	4 cut(s)	239, 467, 560, 618
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	83, 189, 366, 594, 792
MboI	GATC	5 cut(s)	81, 187, 364, 592, 790
MboII	GAAGA	7 cut(s)	73, 134, 161, 519, 531, 570, 609
MfeI	CAATTG	3 cut(s)	117, 640, 710
MflI	RGATCY	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	8 cut(s)	117, 304, 425, 433, 496, 640, 710, 765
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	3 cut(s)	31, 494, 497
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	2 cut(s)	523, 705
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	2 cut(s)	85, 164
MspR9I	CCNGG	2 cut(s)	86, 570
MunI	CAATTG	3 cut(s)	117, 640, 710
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	5 cut(s)	81, 187, 364, 592, 790
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	5 cut(s)	209, 517, 616, 700, 755
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	2 cut(s)	517, 755
PaeI	GCATGC	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	2 cut(s)	523, 705
PfeI	GAWTC	1 cut(s)	317
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	3 cut(s)	182, 552, 750
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	3 cut(s)	31, 493, 497
PpsI	GAGTC	3 cut(s)	31, 493, 497
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	28, 389
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	181, 551, 749
Sau3AI	GATC	5 cut(s)	81, 187, 364, 592, 790
Sau96I	GGNCC	2 cut(s)	28, 389
SchI	GAGTC	3 cut(s)	31, 494, 497
ScrFI	CCNGG	2 cut(s)	86, 570
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	2 cut(s)	28, 389
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	3 cut(s)	32, 56, 441
SmoI	CTYRAG	3 cut(s)	32, 56, 441
SpeI	ACTAGT	1 cut(s)	238
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	8 cut(s)	117, 304, 425, 433, 496, 640, 710, 765
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	1 cut(s)	748
SspMI	CTAG	4 cut(s)	239, 467, 560, 618
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	2 cut(s)	84, 568
StyI	CCWWGG	1 cut(s)	696
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	141, 595, 682
TasI	AATT	8 cut(s)	117, 304, 425, 433, 496, 640, 710, 765
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	180, 550
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	519, 675
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	744
VpaK11BI	GGWCC	2 cut(s)	28, 389
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	2 cut(s)	425, 433
XceI	RCATGY	2 cut(s)	517, 755
XmnI	GAANNNNTTC	2 cut(s)	523, 705
XspI	CTAG	4 cut(s)	239, 467, 560, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.