Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

54434012 .. 54437507

Gene Structure 3496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACCCTCGTCACTCGGACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCCGGGCTGAGCTGAGAGCAAGTGTGTTCGAGGCAATTGAAGAGGAGGACAAGGTCATTGAGAAAGACGAAGGCTTGCCTCCGGCGCTGTTGGGTAGCTGCAACGATCGTGCTAAGCAGCTCCATGCTTCTCCTTCGGGAAGGTTGCTTACGGCATTGATATGCGAATACTTAGACTGGGCGCAGCTGAGCCACACGCTAAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAATCTGAGTTGAAGGACTTCAGTAACAAGAATGGATATGACCTTAACAGAAATGGGGATAGTGGTCCCTTGCTTTTGGATGTGCTTGAAGGATTTTTGAAGTTTGAGAATTTATCTCAGACTAGGGGTACTGGAAGGAGGCTGACTAGTTCAGAAGCAGAGTCCTTATCCAATTTAGACTCTCGGAACATGCGAAGACCTTCTTCATCATCTGTTGCTGGGGGCCTACCTCCACTTGGAAGGCCTGGTACTGCTTCCCAGTCATCTGATCGAAGAGGTGGGTCCTCCATGTCTAGCCACAGGAAAGATGATTACAATTGGAGATACGATGAAGAACTTCCGGAAGATGTCCTCCGAGCTTCAAGTGCCATGGAAAACCTTCAATTGGATAAAAAAGCTCGAAATCTAACCACATCCTGGCGGTACGTTCTGAAACCCTATTGCGAATATTCACATAAACATCAGGAAACACTTTGTTTTCAAATAAAACTCAAGACTGATGCAAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

278

Amino Acids

31.47

Weight (kDa)

6.96

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	77 - 103	1.1e-12	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	454, 574, 749
AfiI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
AgsI	TTSAA	7 cut(s)	122, 337, 413, 424, 687, 707, 806
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	568, 740
AluBI	AGCT	6 cut(s)	94, 180, 202, 268, 683, 722
AluI	AGCT	6 cut(s)	94, 180, 202, 268, 683, 722
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	56, 296
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	2 cut(s)	547, 566
ApeKI	GCWGC	3 cut(s)	180, 199, 265
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
AspLEI	GCGC	2 cut(s)	169, 265
AspS9I	GGNCC	5 cut(s)	28, 51, 389, 547, 606
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	2 cut(s)	56, 296
AvaII	GGWCC	4 cut(s)	28, 51, 389, 606
BarI	GAAGNNNNNNTAC	4 cut(s)	214, 246, 556, 588
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	167, 211, 277
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	570, 742
BcnI	CCSGG	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	4 cut(s)	447, 471, 618, 835
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	3 cut(s)	181, 200, 266
BlpI	GCTNAGC	3 cut(s)	90, 195, 269
BlsI	GCNGC	3 cut(s)	182, 201, 267
Bme1390I	CCNGG	3 cut(s)	86, 570, 742
Bme18I	GGWCC	4 cut(s)	28, 51, 389, 606
BmeT110I	CYCGRG	2 cut(s)	56, 296
BmgT120I	GGNCC	5 cut(s)	28, 51, 389, 547, 606
BmiI	GGNNCC	4 cut(s)	53, 391, 548, 607
BmrFI	CCNGG	3 cut(s)	86, 570, 742
BmrI	ACTGGG	2 cut(s)	268, 577
BmsI	GCATC	1 cut(s)	814
BmuI	ACTGGG	2 cut(s)	268, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
Bpu1102I	GCTNAGC	3 cut(s)	90, 195, 269
BpuEI	CTTGAG	2 cut(s)	17, 800
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
Bse1I	ACTGG	3 cut(s)	263, 460, 583
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	570, 742
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	2 cut(s)	409, 737
BseLI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
BseMII	CTCAG	5 cut(s)	81, 86, 260, 321, 455
BseNI	ACTGG	3 cut(s)	263, 460, 583
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	167, 211, 277
BseYI	CCCAGC	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	549, 568
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	56, 296
BsiSI	CCGG	3 cut(s)	85, 164, 665
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	549, 568
BsoBI	CYCGRG	2 cut(s)	56, 296
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	81, 187, 592
Bsp1720I	GCTNAGC	3 cut(s)	90, 195, 269
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	2 cut(s)	549, 568
BspCNI	CTCAG	5 cut(s)	82, 87, 261, 322, 454
BspEI	TCCGGA	1 cut(s)	664
BspLI	GGNNCC	4 cut(s)	53, 391, 548, 607
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	263, 460, 583
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	3 cut(s)	81, 187, 592
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	570, 742
Bst6I	CTCTTC	2 cut(s)	117, 592
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	7 cut(s)	90, 95, 195, 253, 269, 330, 441
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	409, 737
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 265
BstKTI	GATC	3 cut(s)	84, 190, 595
BstMBI	GATC	3 cut(s)	81, 187, 592
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 689
BstNI	CCWGG	2 cut(s)	570, 742
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	84, 568, 740
BstV1I	GCAGC	3 cut(s)	167, 211, 277
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	549, 568
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	409, 737
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	2 cut(s)	169, 265
Cfr13I	GGNCC	5 cut(s)	28, 51, 389, 547, 606
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	453, 573, 748
CviAII	CATG	4 cut(s)	206, 514, 613, 694
CviQI	GTAC	3 cut(s)	453, 573, 748
DdeI	CTNAG	7 cut(s)	90, 95, 195, 253, 269, 330, 441
DpnI	GATC	3 cut(s)	83, 189, 594
DpnII	GATC	3 cut(s)	81, 187, 592
Eam1104I	CTCTTC	2 cut(s)	117, 592
EarI	CTCTTC	2 cut(s)	117, 592
Eco130I	CCWWGG	1 cut(s)	693
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	4 cut(s)	28, 51, 389, 606
Eco57I	CTGAAG	1 cut(s)	328
Eco88I	CYCGRG	2 cut(s)	56, 296
EcoO109I	RGGNCCY	2 cut(s)	547, 606
EcoRII	CCWGG	2 cut(s)	568, 740
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	4 cut(s)	209, 517, 616, 697
FaiI	YATR	7 cut(s)	207, 244, 363, 515, 614, 695, 780
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	205, 513, 612, 693
Fnu4HI	GCNGC	3 cut(s)	181, 200, 266
FokI	GGATG	2 cut(s)	416, 724
Fsp4HI	GCNGC	3 cut(s)	181, 200, 266
FspBI	CTAG	4 cut(s)	447, 471, 618, 835
GlaI	GCGC	2 cut(s)	168, 264
GluI	GCNGC	3 cut(s)	181, 200, 266
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	549, 568
HapII	CCGG	3 cut(s)	85, 164, 665
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	169, 265
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	209, 517, 616, 697
Hin6I	GCGC	2 cut(s)	167, 263
HinP1I	GCGC	2 cut(s)	167, 263
HinfI	GANTC	3 cut(s)	317, 485, 503
HpaII	CCGG	3 cut(s)	85, 164, 665
Hpy188I	TCNGA	8 cut(s)	51, 331, 444, 478, 510, 592, 680, 756
Hpy188III	TCNNGA	6 cut(s)	34, 58, 219, 665, 788, 817
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	3 cut(s)	183, 310, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 689
HpyF3I	CTNAG	7 cut(s)	90, 95, 195, 253, 269, 330, 441
HpySE526I	ACGT	1 cut(s)	750
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	209, 517, 616, 697
HspAI	GCGC	2 cut(s)	167, 263
Kpn2I	TCCGGA	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	81, 187, 592
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	167, 211, 277
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	4 cut(s)	447, 471, 618, 835
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	2 cut(s)	43, 347
MalI	GATC	3 cut(s)	83, 189, 594
MboI	GATC	3 cut(s)	81, 187, 592
MboII	GAAGA	7 cut(s)	73, 134, 519, 531, 609, 668, 680
MfeI	CAATTG	3 cut(s)	117, 640, 707
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
MlyI	GAGTC	2 cut(s)	494, 497
MroI	TCCGGA	1 cut(s)	664
MroXI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	3 cut(s)	85, 164, 665
MspR9I	CCNGG	3 cut(s)	86, 570, 742
MunI	CAATTG	3 cut(s)	117, 640, 707
MvaI	CCWGG	2 cut(s)	570, 742
MwoI	GCNNNNNNNGC	2 cut(s)	166, 689
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	3 cut(s)	81, 187, 592
NlaIII	CATG	4 cut(s)	209, 517, 616, 697
NlaIV	GGNNCC	4 cut(s)	53, 391, 548, 607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
PfeI	GAWTC	1 cut(s)	317
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	182, 201, 267
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	493, 497
PpsI	GAGTC	2 cut(s)	493, 497
PpuMI	RGGWCCY	1 cut(s)	606
PshAI	GACNNNNGTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	568, 740
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	568, 740
PspN4I	GGNNCC	4 cut(s)	53, 391, 548, 607
PspPI	GGNCC	5 cut(s)	28, 51, 389, 547, 606
PspPPI	RGGWCCY	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	454, 574, 749
RsaNI	GTAC	3 cut(s)	453, 573, 748
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	181, 200, 266
Sau3AI	GATC	3 cut(s)	81, 187, 592
Sau96I	GGNCC	5 cut(s)	28, 51, 389, 547, 606
SchI	GAGTC	2 cut(s)	494, 497
ScrFI	CCNGG	3 cut(s)	86, 570, 742
SfaNI	GCATC	1 cut(s)	814
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	4 cut(s)	28, 51, 389, 606
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	3 cut(s)	32, 56, 815
SmoI	CTYRAG	3 cut(s)	32, 56, 815
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	1 cut(s)	745
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	4 cut(s)	447, 471, 618, 835
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	3 cut(s)	84, 568, 740
StyI	CCWWGG	1 cut(s)	693
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	4 cut(s)	57, 111, 595, 724
TasI	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	180, 199, 265
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	519, 669
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	741
VpaK11BI	GGWCC	4 cut(s)	28, 51, 389, 606
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
XspI	CTAG	4 cut(s)	447, 471, 618, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.