Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

16677144 .. 16679840

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACCCTCGTCACTCGGACCCTCGAAAAGAAGGGCGTCCTCGCCAAGATCCGGGCTGAGCTGAGAGCAAGTGTGTTTGAGGCGATTGAAGAGGAGGACAAGGAGATTGAGAAAGACGAAGGCTTGCCTCCGGCGCTATTGGGTAGCTGTAATGATCGTGCTAAGCAGCTTCATGCTTCTCCTTCGGGGAGGTTGCTTACGGCATTGGTATGCGAGTACTTAGACTGGGCGCAGCTGAACCACACGATGAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCCTGGAAAGCTGAGTTGAAGGACTTCAGTAATAAGAATGGATATGACCTTAACAGAAATGGGGATAGTGGTCCTTTGCTTTTGGATGTGCTTGAAGGATTTTTGAAGTTTGAGAATTTGTCTCAAGCAAGGGGTACTGGAAGGAGGCTAACTGCTTCAGAAGCAGAGGCCTTATCTAATTTAGACTCTAGGAACATGCGAAGACCTTCTTCGTCATCTGTTGCTGGAGGCTTACCTCCACTGGGAAGGCCTGGTGCTGCTTCCCAGTCATCTGATCGAAGAGGTGGATCCTCCATGTCGAGCCACAGGAAAGATGAGTACAATTGGAGATATGACAATGAAGAACTTCCGGAAGCCATGGAAAACCTTCAATTGGATAAAAAAGCTCGAAATCTAACCACATCCTGGCGGCACGCCGGAGATGGAAGTAGTGAGGATGACAGCAGGTCTGACCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

260

Amino Acids

29.0

Weight (kDa)

5.33

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	77 - 103	2.2e-12	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	753
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	76, 600, 613
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	328, 459
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	251, 454, 638
AfiI	CCNNNNNNNGG	4 cut(s)	84, 560, 691, 723
AgsI	TTSAA	5 cut(s)	122, 337, 413, 424, 689
AhdI	GACNNNNNGTC	1 cut(s)	763
AjnI	CCWGG	3 cut(s)	320, 568, 722
AluBI	AGCT	6 cut(s)	94, 180, 202, 268, 329, 704
AluI	AGCT	6 cut(s)	94, 180, 202, 268, 329, 704
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	76, 600, 613
Ama87I	CYCGRG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	2 cut(s)	486, 566
ApeKI	GCWGC	3 cut(s)	199, 265, 575
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	4 cut(s)	341, 523, 663, 684
AspLEI	GCGC	2 cut(s)	169, 265
AspS9I	GGNCC	3 cut(s)	28, 51, 389
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	3 cut(s)	28, 51, 389
BamHI	GGATCC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	211, 277, 562
BccI	CCATC	2 cut(s)	19, 734
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	3 cut(s)	322, 570, 724
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	753
BisI	GCNGC	4 cut(s)	200, 266, 576, 728
BlpI	GCTNAGC	2 cut(s)	90, 195
BlsI	GCNGC	4 cut(s)	201, 267, 577, 729
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	4 cut(s)	86, 322, 570, 724
Bme18I	GGWCC	3 cut(s)	28, 51, 389
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	3 cut(s)	28, 51, 389
BmiI	GGNNCC	2 cut(s)	53, 607
BmrFI	CCNGG	4 cut(s)	86, 322, 570, 724
BmrI	ACTGGG	3 cut(s)	268, 569, 577
BmuI	ACTGGG	3 cut(s)	268, 569, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	2 cut(s)	90, 195
BpuEI	CTTGAG	2 cut(s)	17, 426
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 560, 691, 723
Bse1I	ACTGG	4 cut(s)	263, 460, 564, 583
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	3 cut(s)	322, 570, 724
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	3 cut(s)	409, 719, 760
BseLI	CCNNNNNNNGG	4 cut(s)	84, 560, 691, 723
BseMII	CTCAG	3 cut(s)	81, 86, 321
BseNI	ACTGG	4 cut(s)	263, 460, 564, 583
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	211, 277, 562
BshFI	GGCC	2 cut(s)	488, 568
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	85, 164, 668, 735
BslI	CCNNNNNNNGG	4 cut(s)	84, 560, 691, 723
BsmAI	GTCTC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	488, 568
BsoBI	CYCGRG	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	81, 187, 592, 605
Bsp1720I	GCTNAGC	2 cut(s)	90, 195
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	2 cut(s)	488, 568
BspCNI	CTCAG	3 cut(s)	82, 87, 322
BspEI	TCCGGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	53, 607
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	3 cut(s)	76, 600, 613
BsrI	ACTGG	4 cut(s)	263, 460, 564, 583
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	4 cut(s)	81, 187, 592, 605
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	3 cut(s)	322, 570, 724
Bst6I	CTCTTC	2 cut(s)	117, 592
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	158, 732
BstDEI	CTNAG	5 cut(s)	90, 95, 195, 253, 330
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	3 cut(s)	409, 719, 760
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 265
BstKTI	GATC	4 cut(s)	84, 190, 595, 608
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	4 cut(s)	81, 187, 592, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 479
BstNI	CCWGG	3 cut(s)	322, 570, 724
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	84, 320, 568, 722
BstV1I	GCAGC	3 cut(s)	211, 277, 562
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	2 cut(s)	81, 605
BstYI	RGATCY	2 cut(s)	81, 605
BsuRI	GGCC	2 cut(s)	488, 568
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	3 cut(s)	409, 719, 760
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	2 cut(s)	158, 732
CfoI	GCGC	2 cut(s)	169, 265
Cfr13I	GGNCC	3 cut(s)	28, 51, 389
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	250, 453, 637
CviAII	CATG	4 cut(s)	206, 514, 613, 676
CviQI	GTAC	3 cut(s)	250, 453, 637
DdeI	CTNAG	5 cut(s)	90, 95, 195, 253, 330
DpnI	GATC	4 cut(s)	83, 189, 594, 607
DpnII	GATC	4 cut(s)	81, 187, 592, 605
DriI	GACNNNNNGTC	1 cut(s)	763
Eam1104I	CTCTTC	2 cut(s)	117, 592
Eam1105I	GACNNNNNGTC	1 cut(s)	763
EarI	CTCTTC	2 cut(s)	117, 592
Eco130I	CCWWGG	1 cut(s)	675
Eco147I	AGGCCT	2 cut(s)	488, 568
Eco47I	GGWCC	3 cut(s)	28, 51, 389
Eco57I	CTGAAG	2 cut(s)	328, 459
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	320, 568, 722
EcoT14I	CCWWGG	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	4 cut(s)	209, 517, 616, 679
FaiI	YATR	7 cut(s)	207, 244, 363, 515, 614, 651, 677
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	4 cut(s)	205, 513, 612, 675
Fnu4HI	GCNGC	4 cut(s)	200, 266, 576, 728
FokI	GGATG	3 cut(s)	416, 706, 767
Fsp4HI	GCNGC	4 cut(s)	200, 266, 576, 728
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	168, 264
GluI	GCNGC	4 cut(s)	200, 266, 576, 728
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	488, 568
HapII	CCGG	4 cut(s)	85, 164, 668, 735
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	169, 265
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	209, 517, 616, 679
Hin6I	GCGC	2 cut(s)	167, 263
HinP1I	GCGC	2 cut(s)	167, 263
HinfI	GANTC	2 cut(s)	317, 503
HpaII	CCGG	4 cut(s)	85, 164, 668, 735
Hpy188I	TCNGA	4 cut(s)	51, 478, 592, 769
Hpy188III	TCNNGA	2 cut(s)	34, 668
HpyAV	CCTTC	9 cut(s)	58, 146, 225, 331, 407, 453, 534, 558, 695
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 479
HpyF3I	CTNAG	5 cut(s)	90, 95, 195, 253, 330
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	209, 517, 616, 679
HspAI	GCGC	2 cut(s)	167, 263
Kpn2I	TCCGGA	1 cut(s)	667
Kzo9I	GATC	4 cut(s)	81, 187, 592, 605
Lsp1109I	GCAGC	3 cut(s)	211, 277, 562
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	83, 189, 594, 607
MboI	GATC	4 cut(s)	81, 187, 592, 605
MboII	GAAGA	5 cut(s)	134, 519, 531, 609, 671
MfeI	CAATTG	2 cut(s)	640, 689
MflI	RGATCY	2 cut(s)	81, 605
MluCI	AATT	5 cut(s)	304, 433, 496, 640, 689
MlyI	GAGTC	1 cut(s)	497
MroI	TCCGGA	1 cut(s)	667
MroXI	GAANNNNTTC	4 cut(s)	341, 523, 663, 684
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	4 cut(s)	85, 164, 668, 735
MspR9I	CCNGG	4 cut(s)	86, 322, 570, 724
MunI	CAATTG	2 cut(s)	640, 689
MvaI	CCWGG	3 cut(s)	322, 570, 724
MwoI	GCNNNNNNNGC	2 cut(s)	166, 479
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	4 cut(s)	81, 187, 592, 605
NlaIII	CATG	4 cut(s)	209, 517, 616, 679
NlaIV	GGNNCC	2 cut(s)	53, 607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	488, 568
PdmI	GAANNNNTTC	4 cut(s)	341, 523, 663, 684
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	723
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	201, 267, 577, 729
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	3 cut(s)	320, 568, 722
PspGI	CCWGG	3 cut(s)	320, 568, 722
PspN4I	GGNNCC	2 cut(s)	53, 607
PspPI	GGNCC	3 cut(s)	28, 51, 389
PsuI	RGATCY	2 cut(s)	81, 605
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	251, 454, 638
RsaNI	GTAC	3 cut(s)	250, 453, 637
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	200, 266, 576, 728
Sau3AI	GATC	4 cut(s)	81, 187, 592, 605
Sau96I	GGNCC	3 cut(s)	28, 51, 389
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	4 cut(s)	86, 322, 570, 724
SinI	GGWCC	3 cut(s)	28, 51, 389
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	32, 441
SmoI	CTYRAG	2 cut(s)	32, 441
Sse9I	AATT	5 cut(s)	304, 433, 496, 640, 689
SseBI	AGGCCT	2 cut(s)	488, 568
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	1 cut(s)	507
StuI	AGGCCT	2 cut(s)	488, 568
StyD4I	CCNGG	4 cut(s)	84, 320, 568, 722
StyI	CCWWGG	1 cut(s)	675
TaqI	TCGA	4 cut(s)	57, 595, 617, 706
TasI	AATT	5 cut(s)	304, 433, 496, 640, 689
TatI	WGTACW	2 cut(s)	249, 636
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	199, 265, 575
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	194, 296, 672
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	723
VpaK11BI	GGWCC	3 cut(s)	28, 51, 389
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	517
XmnI	GAANNNNTTC	4 cut(s)	341, 523, 663, 684
XspI	CTAG	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.