Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013175

Physical Location & Seq

Genomic Coordinates Forward (+)

22877011 .. 22879898

Gene Structure 2888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGACTACACGAGGGAGATGATGGACCTCAAGACTCTCGTCACTCGCACCCTCGAGAAGAAGGGCGTACTCGCCAAGATCCGGGCTGAGTTGAGAGCAAGTGTGTTTGAGGCAATTGAGGAGGAGGACAAGGTCATTGAGAAAGACGAAGGCTTGCCTCCGGCATTGCTTGGTAGCTGCAACGATCGCGCTAAACAGCTCCACGCTTCTCCTTCAGGAAGGTTGCTTACGGCACTGATATGTGAATACCTAGACTGGGCGCAACTAAACCACACGCTAAAAGTTTACCAGCCCGAGTGTAATTTGCAGAAGGATTCTTGGAAAGCTGAGTTGAAGGACTTTAGTAGCAAGAATGGGTATGATCTGAACCGAAATGGAGATAGCTGTCCTTTGCTTTTGGACGTGCTTGAAGGATTCTTGAAATTTGAGAATTTATCTCAAGCAAGGGGTACTGGAAGGAGGCTAACTACTTCAGAAACGGAGTCCTTATCCAATTTGGATTCTCGGAACATGCGAAGACCTTCTTCGTCATCTGTTGCGGGAGGGCTACCTCCACTAGGAAGGCCTGGTGCATCTTCCCAGTCAACTGATCGAAGAGGTGGGTCCTCCATGTCTGGCTACAGGAAAGATGACTACAACTATAGGTATGACAGTGATGAAAGTCCAGAGGATGTCATTCGAGCTTCAAGTGCAATGGAAAATCTCCAATTGGATAGAAAAGCTCGCAATCTAACAACATCTTGGCGGCACGCAGGCGATGGAATTAGTGAGGATGACGGCAGGGCCGACCACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

267

Amino Acids

29.74

Weight (kDa)

5.43

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FOP_dimer	PF09398	62 - 137	7.1e-06	FOP N terminal dimerisation domain
LisH_2	PF16045	77 - 103	4.3e-13	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55000
fragaria_vesca	FvH4_7g20520
malus_domestica	MD01G1114200.v1.1 MD07G1182100.v1.1
prunus_persica	Prupe.2G220800_v2.0.a1 Prupe.2G220800_v2.0.a1
pyrus_communis	pycom07g17480
rosa_chinensis	RchiOBHm_Chr1g0364411
rosa_laevigata	RLG00000027482
rosa_multiflora	Rmu_sc0001342.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292300
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324200 Rh1BG286900 Rh1CG303500 Rh1DG318400
rosa_wichuraiana	Rw1G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	542, 748
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	425, 433
AcuI	CTGAAG	2 cut(s)	201, 459
AfaI	GTAC	2 cut(s)	72, 454
AfiI	CCNNNNNNNGG	3 cut(s)	84, 259, 560
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	337, 413, 424, 690
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	6 cut(s)	180, 202, 329, 387, 686, 725
AluI	AGCT	6 cut(s)	180, 202, 329, 387, 686, 725
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	56, 296
AoxI	GGCC	2 cut(s)	566, 786
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	2 cut(s)	425, 433
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	2 cut(s)	194, 265
AspS9I	GGNCC	3 cut(s)	28, 606, 786
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	2 cut(s)	56, 296
AvaII	GGWCC	2 cut(s)	28, 606
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	2 cut(s)	19, 755
BceAI	ACGGC	2 cut(s)	249, 796
BciT130I	CCWGG	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	2 cut(s)	254, 560
BfmI	CTRYAG	2 cut(s)	622, 643
BisI	GCNGC	2 cut(s)	181, 749
BlsI	GCNGC	2 cut(s)	182, 750
Bme1390I	CCNGG	2 cut(s)	86, 570
Bme18I	GGWCC	2 cut(s)	28, 606
BmeT110I	CYCGRG	2 cut(s)	56, 296
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	3 cut(s)	28, 606, 786
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	86, 570
BmrI	ACTGGG	2 cut(s)	268, 577
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	2 cut(s)	268, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
BpuEI	CTTGAG	2 cut(s)	17, 426
BpuMI	CCSGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 259, 560
Bse1I	ACTGG	3 cut(s)	263, 460, 583
Bse3DI	GCAATG	2 cut(s)	167, 702
BseBI	CCWGG	1 cut(s)	570
BseGI	GGATG	3 cut(s)	10, 679, 781
BseLI	CCNNNNNNNGG	3 cut(s)	84, 259, 560
BseMI	GCAATG	2 cut(s)	167, 702
BseMII	CTCAG	2 cut(s)	81, 321
BseNI	ACTGG	3 cut(s)	263, 460, 583
BseRI	GAGGAG	2 cut(s)	137, 140
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	568, 788
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	56, 296
BsiSI	CCGG	2 cut(s)	85, 164
BslI	CCNNNNNNNGG	3 cut(s)	84, 259, 560
BsnI	GGCC	2 cut(s)	568, 788
BsoBI	CYCGRG	2 cut(s)	56, 296
Bsp143I	GATC	4 cut(s)	81, 187, 364, 592
BspACI	CCGC	2 cut(s)	542, 748
BspANI	GGCC	2 cut(s)	568, 788
BspCNI	CTCAG	2 cut(s)	82, 322
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	167, 702
BsrI	ACTGG	3 cut(s)	263, 460, 583
BssMI	GATC	4 cut(s)	81, 187, 364, 592
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	592
BstC8I	GCNNGC	4 cut(s)	158, 727, 753, 757
BstDEI	CTNAG	2 cut(s)	90, 330
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	10, 679, 781
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	194, 265
BstKTI	GATC	4 cut(s)	84, 190, 367, 595
BstMBI	GATC	4 cut(s)	81, 187, 364, 592
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 692
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	517, 799
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	84, 568
BstSFI	CTRYAG	2 cut(s)	622, 643
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	568, 788
BtgZI	GCGATG	1 cut(s)	774
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	10, 679, 781
BtsIMutI	CAGTG	2 cut(s)	236, 661
Cac8I	GCNNGC	4 cut(s)	158, 727, 753, 757
CfoI	GCGC	2 cut(s)	194, 265
Cfr13I	GGNCC	3 cut(s)	28, 606, 786
Csp6I	GTAC	2 cut(s)	71, 453
CviAII	CATG	3 cut(s)	514, 613, 796
CviQI	GTAC	2 cut(s)	71, 453
DdeI	CTNAG	2 cut(s)	90, 330
DpnI	GATC	4 cut(s)	83, 189, 366, 594
DpnII	GATC	4 cut(s)	81, 187, 364, 592
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	28, 606
Eco57I	CTGAAG	2 cut(s)	201, 459
Eco88I	CYCGRG	2 cut(s)	56, 296
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	568
FaeI	CATG	3 cut(s)	517, 616, 799
FaiI	YATR	7 cut(s)	244, 363, 515, 614, 645, 651, 797
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	3 cut(s)	513, 612, 795
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	181, 749
FokI	GGATG	3 cut(s)	17, 686, 788
Fsp4HI	GCNGC	2 cut(s)	181, 749
FspBI	CTAG	2 cut(s)	254, 560
GlaI	GCGC	2 cut(s)	193, 264
GluI	GCNGC	2 cut(s)	181, 749
HaeIII	GGCC	2 cut(s)	568, 788
HapII	CCGG	2 cut(s)	85, 164
HhaI	GCGC	2 cut(s)	194, 265
Hin1II	CATG	3 cut(s)	517, 616, 799
Hin6I	GCGC	2 cut(s)	192, 263
HinP1I	GCGC	2 cut(s)	192, 263
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	5 cut(s)	37, 317, 417, 485, 503
HpaII	CCGG	2 cut(s)	85, 164
Hpy166II	GTNNAC	2 cut(s)	289, 588
Hpy188I	TCNGA	3 cut(s)	369, 478, 510
Hpy188III	TCNNGA	5 cut(s)	34, 58, 219, 421, 668
Hpy8I	GTNNAC	2 cut(s)	289, 588
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	183, 310, 575, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 692
HpyF3I	CTNAG	2 cut(s)	90, 330
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	517, 616, 799
HspAI	GCGC	2 cut(s)	192, 263
Kzo9I	GATC	4 cut(s)	81, 187, 364, 592
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	254, 560
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	83, 189, 366, 594
MboI	GATC	4 cut(s)	81, 187, 364, 592
MboII	GAAGA	5 cut(s)	73, 519, 531, 570, 609
MfeI	CAATTG	2 cut(s)	117, 710
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	7 cut(s)	117, 304, 425, 433, 496, 710, 765
MlyI	GAGTC	2 cut(s)	31, 494
MroXI	GAANNNNTTC	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	2 cut(s)	85, 164
MspR9I	CCNGG	2 cut(s)	86, 570
MunI	CAATTG	2 cut(s)	117, 710
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	189, 692
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	81, 187, 364, 592
NlaIII	CATG	3 cut(s)	517, 616, 799
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	2 cut(s)	517, 799
PaeR7I	CTCGAG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	568
PciI	ACATGT	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	2 cut(s)	514, 786
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	317, 417, 503
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	182, 750
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	31, 493
PpsI	GAGTC	2 cut(s)	31, 493
PpuMI	RGGWCCY	1 cut(s)	606
PscI	ACATGT	1 cut(s)	795
PshAI	GACNNNNGTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	3 cut(s)	28, 606, 786
PspPPI	RGGWCCY	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	72, 454
RsaNI	GTAC	2 cut(s)	71, 453
RseI	CAYNNNNRTG	1 cut(s)	241
SatI	GCNGC	2 cut(s)	181, 749
Sau3AI	GATC	4 cut(s)	81, 187, 364, 592
Sau96I	GGNCC	3 cut(s)	28, 606, 786
SchI	GAGTC	2 cut(s)	31, 494
ScrFI	CCNGG	2 cut(s)	86, 570
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	2 cut(s)	622, 643
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	28, 606
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	3 cut(s)	32, 56, 441
SmoI	CTYRAG	3 cut(s)	32, 56, 441
Sse9I	AATT	7 cut(s)	117, 304, 425, 433, 496, 710, 765
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	2 cut(s)	542, 748
SspMI	CTAG	2 cut(s)	254, 560
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	2 cut(s)	84, 568
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	57, 595, 682
TasI	AATT	7 cut(s)	117, 304, 425, 433, 496, 710, 765
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	317, 417, 503
TscAI	CASTG	2 cut(s)	243, 661
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	243, 661
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	28, 606
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	2 cut(s)	425, 433
XceI	RCATGY	2 cut(s)	517, 799
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	2 cut(s)	254, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.