AT3G55320

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005782
Physical Location & Seq
Reverse (-)
20506992 .. 20513533
6542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55320.1

Sequence Viewer

Length: 4227 bp
ATGATGATCTCTAGAGGTTTATTCGGATGGTCTCCGCCTCATATGCAACCATTAACTCCAGTCTCTGAAGTCTCCGAGCCACCTGAGTCTCCTTCTCCTTATCTCGACCCTGGTGCTGAGTCTGGTGGTGGCACGGGCACGGCGGCGGCGCTAGCGGAGGCTGATGAAGAGATGGATGATCAAGATGAGCTTGAACCACCTCCTGCTGCTGTTCCTTTCTCTCAGCTCTTCGCTTGCGCTGACCGCTTTGATTGGGTGCTTATGATTGTTGGCTCTGTTGCTGCTGCTGCTCATGGTACTGCGCTTATTGTCTACTTGCATTACTTCGCCAAGATTGTTGATGTTCTTGCTTTCTCTAATGATTCTAGTCAGCAGAGATCTGAACACCAGTTTGACCGACTCGTCCAGCTTTCGTTGACGATCGTGTACATTGCTGGAGGTGTTTTCATTTCTGGTTGGATTGAGGTGTCTTGCTGGATACTGACTGGAGAAAGGCAGACTGCTGTGATCAGGTCCAAGTATGTCCAAGTATTATTGAATCAAGATATGAGTTTCTTTGATACATATGGTAATAATGGAGATATTGTGAGCCAAGTGCTGAGCGATGTCTTACTCATTCAGTCAGCTTTAAGCGAGAAAGTTGGAAATTATATTCATAACATGGCTACGTTTATCAGTGGACTTGTTATTGGATTTGTCAACTGCTGGGAAATTGCATTGATTACACTAGCCACTGGTCCTTTCATCGTTGCTGCTGGAGGCATATCAAATATTTTTCTACACAGACTTGCTGAGAACATACAGGATGCATATGCTGAAGCAGCCGGCATTGCTGAACAGGCGATCTCTTACATTAGGACTTTATATGCCTTTACAAATGAAACTCTAGCAAAATATTCATATGCAACCTCCCTTCAAGCAACCCTGAGATACGGCATATTAATTAGTCTTGTGCAAGGCCTTGGACTTGGATTTACTTATGGGCTTGCTATATGCTCGTGTGCGCTGCAACTTTGGATTGGACGATTCTTTGTTCACAATGGAAGGGCAAATGGTGGAGAAATCATAGCAGCTCTTTTTGCTGTTATTTTAAGTGGCCTGGGGTTAAATCAAGCTGCTACGAACTTCTACTCTTTTGATCAAGGAAGGATTGCTGCGTATAGACTTTTTGAGATGATAACTCGTTCATCTTCTGTGGCTAACCAAGAAGGAGCTGTGCTGGCTTCTGTTCAAGGAAATATTGAGTTCCGGAATGTATATTTCAGTTATTTGTCACGACCTGAAATTCCAATCTTGAGCGGATTTTACCTCACGGTTCCTGCTAAAAAAGCAGTTGCACTTGTTGGTAGAAATGGTTCTGGAAAAAGCAGCATCATTCCTTTAATGGAACGGTTTTATGATCCGACATTAGGAGAAGTTCTTCTTGATGGAGAAAATATTAAAAATCTAAAACTGGAGTGGCTGAGAAGCCAAATAGGGTTGGTTACCCAGGAGCCTGCTCTGCTTAGCTTGAGCATAAGAGAGAATATTGCATATGGTCGTGATGCTACTCTTGATCAGATAGAGGAGGCAGCTAAAAATGCGCATGCGCACACATTTATCAGCTCACTTGAAAAAGGATATGAAACACAGGTCGGGAGAGCCGGTTTAGCAATGACAGAGGAGCAGAAAATTAAACTTTCGATTGCTAGAGCTGTGCTTTTGAATCCAACAATTCTTCTGCTTGATGAAGTAACTGGAGGACTAGACTTCGAAGCTGAAAGAATTGTGCAGGAAGCTCTTGATCTTCTGATGTTGGGACGGTCAACCATAATAATAGCCCGACGATTAAGTTTGATAAAAAATGCTGACTATATTGCTGTGATGGAGGAGGGTCAGCTCGTTGAAATGGGTACACACGATGAATTGATAAATCTTGGTGGGCTGTATGCTGAGCTTCTGAAGTGTGAAGAAGCAACAAAGCTTCCAAGAAGGATGCCAGTTAGGAACTACAAGGAGTCTGCGGTGTTTGAGGTCGAGAGAGACTCTTCAGCTGGCTGTGGCGTCCAAGAACCATCATCACCCAAAATGATTAAGTCTCCATCTCTTCAAAGAGGTAGTGGTGTGTTCCGTCCCCAGGAACTGTGTTTTGATACTGAAGAATCACCTAAAGCTCATAGCCCTGCATCTGAGAAAACAGGGGAAGATGGCATGTCTCTGGATTGTGCTGATAAAGAGCCAACTATCAAAAGGCAAGATAGTTTCGAGATGAGGTTGCCACACCTTCCTAAAGTTGACGTTCAGTGTCCCCAACAAAAATCAAACGGCTCAGAGCCAGAGTCCCCTGTTTCACCCCTTTTGACATCAGATCCTAAAAACGAGCGTTCCCATTCGCAGACGTTTAGTCGTCCTCTTAGTTCTCCTGATGACACTAAAGCAAATGGTAAGGCGTCTAAGGATGCTCAACACAAGGAGTCACCTTCGTTTTGGAGGTTGGCACAGCTTAGTTTCCCAGAGTGGCTTTATGCTGTATTAGGGAGTCTTGGTGCTGCCATCTTTGGTTCTTTCAATCCTCTTCTGGCTTATGTCATTGCGTTGGTAGTTACGGAATATTATAAAAGCAAAGGAGGCCACCTGCGCGAGGAGGTTGACAAATGGTGTTTGATCATTGCCTGCATGGGGATTGTGACAGTTGTTGCCAATTTCTTGCAGCATTTCTATTTTGGCATAATGGGAGAGAAAATGACGGAGAGAGTTAGGAGGATGATGTTCTCAGCAATGCTGCGTAACGAAGTTGGATGGTTCGATGATGAAGAGAACAGTCCAGATACATTATCCATGCGTTTAGCAAATGATGCTACTTTTGTCCGAGCTGCCTTCAGCAACAGGCTTTCAATATTTATTCAAGATAGTTTTGCTGTTATTGTTGCTCTTCTGATTGGGTTGCTGCTTGGTTGGCGTTTGGCCCTTGTTGCATTGGCAACTCTGCCAATTCTCACTCTTTCTGCCATTGCTCAGAAACTGTGGCTTGCCGGATTCTCAAAAGGCATACAGGAGATGCACAGAAAAGCATCTTTAGTTCTCGAGGATGCTGTTAGAAACATCTACACTGTTGTTGCTTTCTGTGCTGGTAACAAAGTGATGGAACTGTACAGGATGCAACTCCAGCGGATACTCAGACAGAGCTATCTCCATGGGATGGCTATTGGTTTTGCGTTTGGTTTTTCACAGTTTCTTCTTTTCGCCTGCAACGCGCTCCTCCTATGGTGCACTGCGTTATCTGTTAACCGTGGATATATGAAATTATCGACAGCTATAACGGAGTACATGGTTTTCTCATTTGCTACATTCGCCCTTGTGGAGCCATTTGGATTAGCACCGTATATCCTCAAGCGACGTAAGTCTCTGATATCAGTGTTTGAAATAGTCGATCGAGTCCCTACGATTGAACCAGATGATAACTCTGCTCTCAAACCTCCTAATGTCTACGGAAGTATTGAATTGAAAAACGTAGACTTCTGCTACCCAACTCGACCCGAGATACTAGTGCTGAGCAACTTTAGTCTCAAAATCAGTGGCGGACAGACTGTAGCTGTTGTTGGCGTTTCAGGTTCTGGAAAGAGCACGATAATCTCACTAGTAGAGAGATACTACGACCCAGTTGCTGGCCAAGTCCTACTAGATGGGAGAGACTTAAAGTTATATAACTTGAGATGGTTGAGAAGCCACATGGGTTTGGTTCAGCAAGAACCCATAATCTTTTCCACAACAATCAGAGAGAATATCATATATGCAAGGCATAATGCAAGTGAAGCTGAGATGAAGGAAGCAGCAAGAATTGCAAATGCTCACCATTTCATCAGCAGCTTACCTCACGGTTACGACACACATATTGGGATGAGAGGCGTAGAACTTACCCCTGGACAGAAACAGAGAATAGCAATAGCACGCGTAGTACTGAAGAATGCTCCCATCATCTTAATAGATGAAGCCAGCTCGTCTATCGAATCTGAATCGAGTCGGGTTGTGCAGGAGGCTCTTGATACATTGATAATGGGGAACAAAACAACAATTCTGATAGCACATAGAGCGGCTATGATGAGACATGTGGATAACATTGTGGTACTTAATGGAGGGAGGATAGTAGAGGAAGGTACACATGATTCTTTAGCAGCAAAAAATGGGTTGTATGTACGTTTGATGCAACCACACTTTGGTAAAGGTCTACGCCAACATCGACTGATATAG

Protein Analysis

1408

Amino Acids

155.15

Weight (kDa)

5.85

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 89 - 363 3.3e-44 ABC transporter transmembrane region
ABC_tran PF00005 434 - 579 6.9e-23 ABC transporter
ABC_membrane PF00664 843 - 1106 1e-40 ABC transporter transmembrane region
ABC_tran PF00005 1177 - 1325 6.8e-27 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2595
AarI CACCTGC 1 cut(s) 2622
AasI GACNNNNNNGTC 1 cut(s) 401
Acc16I TGCGCA 2 cut(s) 1584, 1590
Acc36I ACCTGC 1 cut(s) 2622
AccB7I CCANNNNNTGG 3 cut(s) 3178, 3644, 4193
AccBSI CCGCTC 2 cut(s) 1299, 4070
AccI GTMKAC 4 cut(s) 312, 3465, 3492, 4204
AccII CGCG 3 cut(s) 2619, 3233, 3930
AccIII TCCGGA 1 cut(s) 1248
AclWI GGATC 2 cut(s) 1394, 2342
AcoI YGGCCR 1 cut(s) 3646
AcsI RAATTY 1 cut(s) 1284
AcuI CTGAAG 7 cut(s) 87, 837, 1961, 2013, 2157, 2842, 3959
AcyI GRCGYC 2 cut(s) 2043, 2429
AfaI GTAC 9 cut(s) 298, 428, 1894, 3131, 3305, 3936, 4104, 4135, 4173
AfiI CCNNNNNNNGG 7 cut(s) 1409, 2116, 2620, 2658, 3178, 3644, 4193
AflIII ACRYGT 2 cut(s) 3928, 4084
AhdI GACNNNNNGTC 1 cut(s) 2382
AhlI ACTAGT 2 cut(s) 3523, 3616
AjnI CCWGG 5 cut(s) 109, 1098, 1488, 2115, 3898
Alw21I GWGCWC 2 cut(s) 3251, 3605
Alw44I GTGCAC 1 cut(s) 3247
AlwI GGATC 2 cut(s) 1394, 2342
AlwNI CAGNNNCTG 5 cut(s) 65, 2122, 3001, 3593, 3644
Ama87I CYCGRG 2 cut(s) 3062, 3515
Aor13HI TCCGGA 1 cut(s) 1248
AoxI GGCC 5 cut(s) 958, 1096, 2608, 2943, 3646
ApaLI GTGCAC 1 cut(s) 3247
ApoI RAATTY 1 cut(s) 1284
AseI ATTAAT 1 cut(s) 941
Asp700I GAANNNNTTC 2 cut(s) 1354, 1419
AspLEI GCGC 8 cut(s) 151, 239, 304, 1006, 1585, 1591, 2619, 3235
AspS9I GGNCC 3 cut(s) 513, 737, 2944
AsuHPI GGTGA 5 cut(s) 2052, 2136, 2322, 2448, 3821
AsuII TTCGAA 1 cut(s) 1752
AsuNHI GCTAGC 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 3062, 3515
AvaII GGWCC 2 cut(s) 513, 737
BaeGI GKGCMC 2 cut(s) 140, 3251
BalI TGGCCA 1 cut(s) 3648
BauI CACGAG 1 cut(s) 997
Bbv12I GWGCWC 2 cut(s) 3251, 3605
BceAI ACGGC 3 cut(s) 156, 949, 2320
BcgI CGANNNNNNTGC 4 cut(s) 95, 129, 3623, 3657
BciT130I CCWGG 5 cut(s) 111, 1100, 1490, 2117, 3900
BciVI GTATCC 2 cut(s) 471, 3144
BclI TGATCA 5 cut(s) 178, 507, 1138, 1555, 2643
BcuI ACTAGT 2 cut(s) 3523, 3616
BfmI CTRYAG 1 cut(s) 3567
BfoI RGCGCY 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 2622
BfuI GTATCC 2 cut(s) 471, 3144
BglII AGATCT 1 cut(s) 377
BlpI GCTNAGC 4 cut(s) 599, 1505, 1932, 3530
BmcAI AGTACT 1 cut(s) 3936
Bme1390I CCNGG 5 cut(s) 111, 1100, 1490, 2117, 3900
Bme18I GGWCC 2 cut(s) 513, 737
BmeRI GACNNNNNGTC 1 cut(s) 2382
BmeT110I CYCGRG 2 cut(s) 3062, 3515
BmgT120I GGNCC 3 cut(s) 513, 737, 2944
BmiI GGNNCC 3 cut(s) 1317, 1494, 3342
BmrFI CCNGG 5 cut(s) 111, 1100, 1490, 2117, 3900
BmrI ACTGGG 1 cut(s) 3632
BmtI GCTAGC 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 3632
BoxI GACNNNNGTC 1 cut(s) 3379
BplI GAGNNNNNCTC 2 cut(s) 2009, 2041
BpmI CTGGAG 7 cut(s) 42, 456, 507, 777, 1475, 1758, 3128
Bpu1102I GCTNAGC 4 cut(s) 599, 1505, 1932, 3530
Bpu14I TTCGAA 1 cut(s) 1752
BpuEI CTTGAG 4 cut(s) 1315, 1531, 3353, 3709
BsaHI GRCGYC 2 cut(s) 2043, 2429
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 8 cut(s) 109, 961, 1099, 1488, 2115, 3172, 3268, 3898
BsaWI WCCGGW 1 cut(s) 1248
BsaXI ACNNNNNCTCC 6 cut(s) 570, 600, 1630, 1660, 2509, 2539
Bsc4I CCNNNNNNNGG 7 cut(s) 1409, 2116, 2620, 2658, 3178, 3644, 4193
Bse118I RCCGGY 2 cut(s) 824, 1643
Bse1I ACTGG 8 cut(s) 59, 388, 490, 739, 1458, 1741, 1979, 3638
Bse3DI GCAATG 7 cut(s) 429, 828, 1659, 2568, 2646, 2763, 2988
BseAI TCCGGA 1 cut(s) 1248
BseBI CCWGG 5 cut(s) 111, 1100, 1490, 2117, 3900
BseDI CCNNGG 8 cut(s) 109, 961, 1099, 1488, 2115, 3172, 3268, 3898
BseLI CCNNNNNNNGG 7 cut(s) 1409, 2116, 2620, 2658, 3178, 3644, 4193
BseMI GCAATG 7 cut(s) 429, 828, 1659, 2568, 2646, 2763, 2988
BseNI ACTGG 8 cut(s) 59, 388, 490, 739, 1458, 1741, 1979, 3638
BseRI GAGGAG 5 cut(s) 1580, 1676, 1883, 2636, 3227
BseSI GKGCMC 2 cut(s) 140, 3251
BseYI CCCAGC 1 cut(s) 705
BsgI GTGCAG 2 cut(s) 1790, 4028
Bsh1236I CGCG 3 cut(s) 2619, 3233, 3930
Bsh1285I CGRYCG 2 cut(s) 423, 3412
BshFI GGCC 5 cut(s) 960, 1098, 2610, 2945, 3648
BsiEI CGRYCG 2 cut(s) 423, 3412
BsiHKAI GWGCWC 2 cut(s) 3251, 3605
BsiHKCI CYCGRG 2 cut(s) 3062, 3515
BsiSI CCGG 4 cut(s) 825, 1249, 1644, 3012
BslFI GGGAC 5 cut(s) 1812, 2097, 2271, 2305, 3401
BslI CCNNNNNNNGG 7 cut(s) 1409, 2116, 2620, 2658, 3178, 3644, 4193
BsmFI GGGAC 5 cut(s) 1812, 2097, 2271, 2305, 3401
BsmI GAATGC 1 cut(s) 3949
BsnI GGCC 5 cut(s) 960, 1098, 2610, 2945, 3648
Bso31I GGTCTC 1 cut(s) 36
BsoBI CYCGRG 2 cut(s) 3062, 3515
Bsp119I TTCGAA 1 cut(s) 1752
Bsp1286I GDGCHC 3 cut(s) 140, 3251, 3605
Bsp13I TCCGGA 1 cut(s) 1248
Bsp1407I TGTACA 2 cut(s) 426, 3129
Bsp1720I GCTNAGC 4 cut(s) 599, 1505, 1932, 3530
Bsp19I CCATGG 1 cut(s) 3172
BspANI GGCC 5 cut(s) 960, 1098, 2610, 2945, 3648
BspEI TCCGGA 1 cut(s) 1248
BspFNI CGCG 3 cut(s) 2619, 3233, 3930
BspLI GGNNCC 3 cut(s) 1317, 1494, 3342
BspMI ACCTGC 1 cut(s) 2622
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 1394, 2342
BspQI GCTCTTC 2 cut(s) 233, 2916
BspT104I TTCGAA 1 cut(s) 1752
BspTNI GGTCTC 1 cut(s) 36
BsrBI CCGCTC 2 cut(s) 1299, 4070
BsrDI GCAATG 7 cut(s) 429, 828, 1659, 2568, 2646, 2763, 2988
BsrFI RCCGGY 2 cut(s) 824, 1643
BsrGI TGTACA 2 cut(s) 426, 3129
BsrI ACTGG 8 cut(s) 59, 388, 490, 739, 1458, 1741, 1979, 3638
BssAI RCCGGY 2 cut(s) 824, 1643
BssECI CCNNGG 8 cut(s) 109, 961, 1099, 1488, 2115, 3172, 3268, 3898
BssNI GRCGYC 2 cut(s) 2043, 2429
BssSI CACGAG 1 cut(s) 997
BssT1I CCWWGG 2 cut(s) 961, 3172
Bst2BI CACGAG 1 cut(s) 997
Bst2UI CCWGG 5 cut(s) 111, 1100, 1490, 2117, 3900
Bst6I CTCTTC 7 cut(s) 162, 233, 2032, 2091, 2559, 2787, 2916
BstACI GRCGYC 2 cut(s) 2043, 2429
BstAPI GCANNNNNTGC 2 cut(s) 2834, 3818
BstAUI TGTACA 2 cut(s) 426, 3129
BstBI TTCGAA 1 cut(s) 1752
BstDSI CCRYGG 2 cut(s) 3172, 3268
BstEII GGTNACC 1 cut(s) 1483
BstENI CCTNNNNNAGG 1 cut(s) 2618
BstFNI CGCG 3 cut(s) 2619, 3233, 3930
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 8 cut(s) 151, 239, 304, 1006, 1585, 1591, 2619, 3235
BstMCI CGRYCG 2 cut(s) 423, 3412
BstNI CCWGG 5 cut(s) 111, 1100, 1490, 2117, 3900
BstNSI RCATGY 3 cut(s) 1589, 2194, 4088
BstPAI GACNNNNGTC 1 cut(s) 3379
BstPI GGTNACC 1 cut(s) 1483
BstSCI CCNGG 5 cut(s) 109, 1098, 1488, 2115, 3898
BstSFI CTRYAG 1 cut(s) 3567
BstSLI GKGCMC 2 cut(s) 140, 3251
BstUI CGCG 3 cut(s) 2619, 3233, 3930
BstX2I RGATCY 2 cut(s) 377, 2347
BstYI RGATCY 2 cut(s) 377, 2347
BsuI GTATCC 2 cut(s) 471, 3144
BsuRI GGCC 5 cut(s) 960, 1098, 2610, 2945, 3648
BtgI CCRYGG 2 cut(s) 3172, 3268
BtgZI GCGATG 1 cut(s) 618
BtsI GCAGTG 1 cut(s) 3249
BtsIMutI CAGTG 7 cut(s) 682, 732, 2288, 3087, 3249, 3399, 3559
BveI ACCTGC 1 cut(s) 2622
CaiI CAGNNNCTG 5 cut(s) 65, 2122, 3001, 3593, 3644
CfoI GCGC 8 cut(s) 151, 239, 304, 1006, 1585, 1591, 2619, 3235
Cfr10I RCCGGY 2 cut(s) 824, 1643
Cfr13I GGNCC 3 cut(s) 513, 737, 2944
CseI GACGC 2 cut(s) 2032, 2418
Csp6I GTAC 9 cut(s) 297, 427, 1893, 3130, 3304, 3935, 4103, 4134, 4172
CspCI CAANNNNNGTGG 2 cut(s) 3535, 3570
CviQI GTAC 9 cut(s) 297, 427, 1893, 3130, 3304, 3935, 4103, 4134, 4172
DrdI GACNNNNNNGTC 1 cut(s) 401
DriI GACNNNNNGTC 1 cut(s) 2382
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 3646
Eam1104I CTCTTC 7 cut(s) 162, 233, 2032, 2091, 2559, 2787, 2916
Eam1105I GACNNNNNGTC 1 cut(s) 2382
EarI CTCTTC 7 cut(s) 162, 233, 2032, 2091, 2559, 2787, 2916
EciI GGCGGA 2 cut(s) 24, 3573
Eco130I CCWWGG 2 cut(s) 961, 3172
Eco147I AGGCCT 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 3390
Eco47I GGWCC 2 cut(s) 513, 737
Eco57I CTGAAG 7 cut(s) 87, 837, 1961, 2013, 2157, 2842, 3959
Eco88I CYCGRG 2 cut(s) 3062, 3515
Eco91I GGTNACC 1 cut(s) 1483
EcoNI CCTNNNNNAGG 1 cut(s) 2618
EcoO65I GGTNACC 1 cut(s) 1483
EcoRII CCWGG 5 cut(s) 109, 1098, 1488, 2115, 3898
EcoRV GATATC 1 cut(s) 3390
EcoT14I CCWWGG 2 cut(s) 961, 3172
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 2 cut(s) 961, 3172
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 1407, 1439
FaqI GGGAC 5 cut(s) 1812, 2097, 2271, 2305, 3401
FauNDI CATATG 5 cut(s) 42, 565, 811, 901, 1534
FbaI TGATCA 5 cut(s) 178, 507, 1138, 1555, 2643
FblI GTMKAC 4 cut(s) 312, 3465, 3492, 4204
FspAI RTGCGCAY 2 cut(s) 1584, 1590
FspI TGCGCA 2 cut(s) 1584, 1590
GlaI GCGC 8 cut(s) 150, 238, 303, 1005, 1584, 1590, 2618, 3234
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 7 cut(s) 42, 456, 507, 777, 1475, 1758, 3128
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 5 cut(s) 960, 1098, 2610, 2945, 3648
HapII CCGG 4 cut(s) 825, 1249, 1644, 3012
HgaI GACGC 2 cut(s) 2032, 2418
HhaI GCGC 8 cut(s) 151, 239, 304, 1006, 1585, 1591, 2619, 3235
Hin1I GRCGYC 2 cut(s) 2043, 2429
Hin6I GCGC 8 cut(s) 149, 237, 302, 1004, 1583, 1589, 2617, 3233
HinP1I GCGC 8 cut(s) 149, 237, 302, 1004, 1583, 1589, 2617, 3233
HincII GTYRAC 6 cut(s) 417, 700, 1806, 2275, 2629, 3265
HindII GTYRAC 6 cut(s) 417, 700, 1806, 2275, 2629, 3265
HindIII AAGCTT 1 cut(s) 1961
HpaI GTTAAC 1 cut(s) 3265
HpaII CCGG 4 cut(s) 825, 1249, 1644, 3012
HphI GGTGA 5 cut(s) 2052, 2136, 2322, 2448, 3821
Hpy99I CGWCG 2 cut(s) 1827, 3378
HpyCH4IV ACGT 6 cut(s) 668, 2277, 2378, 3376, 3489, 4174
HpySE526I ACGT 6 cut(s) 668, 2277, 2378, 3376, 3489, 4174
Hsp92I GRCGYC 2 cut(s) 2043, 2429
HspAI GCGC 8 cut(s) 149, 237, 302, 1004, 1583, 1589, 2617, 3233
Kpn2I TCCGGA 1 cut(s) 1248
KroI GCCGGC 1 cut(s) 824
KroNI GCCGGC 1 cut(s) 826
Ksp22I TGATCA 5 cut(s) 178, 507, 1138, 1555, 2643
KspAI GTTAAC 1 cut(s) 3265
LguI GCTCTTC 2 cut(s) 233, 2916
LmnI GCTCC 6 cut(s) 1211, 1492, 1663, 3240, 3340, 3952
MaeII ACGT 6 cut(s) 668, 2277, 2378, 3376, 3489, 4174
MaeIII GTNAC 9 cut(s) 1272, 1483, 1732, 2454, 2581, 2665, 2765, 3110, 3857
MbiI CCGCTC 2 cut(s) 1299, 4070
MflI RGATCY 2 cut(s) 377, 2347
MhlI GDGCHC 3 cut(s) 140, 3251, 3605
MlsI TGGCCA 1 cut(s) 3648
MluI ACGCGT 1 cut(s) 3928
MluNI TGGCCA 1 cut(s) 3648
MmeI TCCRAC 5 cut(s) 437, 622, 1427, 1733, 2755
Mox20I TGGCCA 1 cut(s) 3648
Mph1103I ATGCAT 1 cut(s) 811
MroI TCCGGA 1 cut(s) 1248
MroNI GCCGGC 1 cut(s) 824
MroXI GAANNNNTTC 2 cut(s) 1354, 1419
MscI TGGCCA 1 cut(s) 3648
Msp20I TGGCCA 1 cut(s) 3648
MspA1I CMGCKG 2 cut(s) 2033, 3148
MspI CCGG 4 cut(s) 825, 1249, 1644, 3012
MspR9I CCNGG 5 cut(s) 111, 1100, 1490, 2117, 3900
Mva1269I GAATGC 1 cut(s) 3949
MvaI CCWGG 5 cut(s) 111, 1100, 1490, 2117, 3900
MvnI CGCG 3 cut(s) 2619, 3233, 3930
NaeI GCCGGC 1 cut(s) 826
NcoI CCATGG 1 cut(s) 3172
NdeI CATATG 5 cut(s) 42, 565, 811, 901, 1534
NgoMIV GCCGGC 1 cut(s) 824
NheI GCTAGC 1 cut(s) 151
NlaIV GGNNCC 3 cut(s) 1317, 1494, 3342
NmuCI GTSAC 3 cut(s) 1272, 2454, 2665
NsbI TGCGCA 2 cut(s) 1584, 1590
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 3 cut(s) 1589, 2194, 4088
NspV TTCGAA 1 cut(s) 1752
PaeI GCATGC 1 cut(s) 1589
PaeR7I CTCGAG 1 cut(s) 3062
PaqCI CACCTGC 1 cut(s) 2622
PceI AGGCCT 1 cut(s) 960
PciI ACATGT 1 cut(s) 4084
PciSI GCTCTTC 2 cut(s) 233, 2916
PcsI WCGNNNNNNNCGW 1 cut(s) 4213
PctI GAATGC 1 cut(s) 3949
PdiI GCCGGC 1 cut(s) 826
PdmI GAANNNNTTC 2 cut(s) 1354, 1419
PfeI GAWTC 9 cut(s) 362, 538, 1026, 1705, 2141, 3015, 3986, 3992, 4142
PflMI CCANNNNNTGG 3 cut(s) 3178, 3644, 4193
Ple19I CGATCG 2 cut(s) 423, 3412
PscI ACATGT 1 cut(s) 4084
PshAI GACNNNNGTC 1 cut(s) 3379
PshBI ATTAAT 1 cut(s) 941
PsiI TTATAA 1 cut(s) 2595
Psp6I CCWGG 5 cut(s) 109, 1098, 1488, 2115, 3898
PspEI GGTNACC 1 cut(s) 1483
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 5 cut(s) 109, 1098, 1488, 2115, 3898
PspN4I GGNNCC 3 cut(s) 1317, 1494, 3342
PspPI GGNCC 3 cut(s) 513, 737, 2944
PsrI GAACNNNNNNTAC 2 cut(s) 1339, 1371
PstNI CAGNNNCTG 5 cut(s) 65, 2122, 3001, 3593, 3644
PsuI RGATCY 2 cut(s) 377, 2347
PvuI CGATCG 2 cut(s) 423, 3412
PvuII CAGCTG 1 cut(s) 2033
RsaI GTAC 9 cut(s) 298, 428, 1894, 3131, 3305, 3936, 4104, 4135, 4173
RsaNI GTAC 9 cut(s) 297, 427, 1893, 3130, 3304, 3935, 4103, 4134, 4172
SapI GCTCTTC 2 cut(s) 233, 2916
Sau96I GGNCC 3 cut(s) 513, 737, 2944
ScaI AGTACT 1 cut(s) 3936
ScrFI CCNGG 5 cut(s) 111, 1100, 1490, 2117, 3900
SduI GDGCHC 3 cut(s) 140, 3251, 3605
SfcI CTRYAG 1 cut(s) 3567
Sfr274I CTCGAG 1 cut(s) 3062
SfuI TTCGAA 1 cut(s) 1752
SinI GGWCC 2 cut(s) 513, 737
SlaI CTCGAG 1 cut(s) 3062
SmlI CTYRAG 5 cut(s) 1294, 1510, 3062, 3368, 3688
SmoI CTYRAG 5 cut(s) 1294, 1510, 3062, 3368, 3688
SpeI ACTAGT 2 cut(s) 3523, 3616
SphI GCATGC 1 cut(s) 1589
SseBI AGGCCT 1 cut(s) 960
SspI AATATT 7 cut(s) 772, 896, 1240, 1438, 1528, 2591, 2877
StuI AGGCCT 1 cut(s) 960
StyD4I CCNGG 5 cut(s) 109, 1098, 1488, 2115, 3898
StyI CCWWGG 2 cut(s) 961, 3172
TaiI ACGT 6 cut(s) 671, 2280, 2381, 3379, 3492, 4177
TaqII GACCGA 1 cut(s) 411
TatI WGTACW 4 cut(s) 426, 3129, 3303, 3934
TauI GCSGC 3 cut(s) 146, 149, 4073
TfiI GAWTC 9 cut(s) 362, 538, 1026, 1705, 2141, 3015, 3986, 3992, 4142
TscAI CASTG 7 cut(s) 682, 739, 2288, 3094, 3256, 3399, 3559
TseFI GTSAC 3 cut(s) 1272, 2454, 2665
Tsp45I GTSAC 3 cut(s) 1272, 2454, 2665
TspGWI ACGGA 5 cut(s) 2099, 2600, 2741, 3314, 3483
TspRI CASTG 7 cut(s) 682, 739, 2288, 3094, 3256, 3399, 3559
Van91I CCANNNNNTGG 3 cut(s) 3178, 3644, 4193
VneI GTGCAC 1 cut(s) 3247
VpaK11BI GGWCC 2 cut(s) 513, 737
VspI ATTAAT 1 cut(s) 941
XagI CCTNNNNNAGG 1 cut(s) 2618
XapI RAATTY 1 cut(s) 1284
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 3 cut(s) 1589, 2194, 4088
XhoI CTCGAG 1 cut(s) 3062
XmiI GTMKAC 4 cut(s) 312, 3465, 3492, 4204
XmnI GAANNNNTTC 2 cut(s) 1354, 1419
ZrmI AGTACT 1 cut(s) 3936
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.