AT3G55420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013288
Physical Location & Seq
Forward (+)
20547661 .. 20548879
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55420.1

Sequence Viewer

Length: 651 bp
ATGGCAGAGAAAGAGAAGAAAACAAAAAAGAAGAAGAAGAAAGAGAAGCATCAATCTTCCGACATCTCTTTCAAGCCTTCTTCAGACGTAAAAGGACTCAAATTCGGCGGCCAAATAATCGTCAAATCATTCACAATCCGACGAGCAAGAACATTCGAGCTTCTTAAACTCCTCTCTCTCCCTTCTTCATCATCACCGCCGCTTCTTTCCACGGCGGCTTACCTTCCGACAAACTTCACAATCCTTGCACACCACGCATGGCACACACTAACACTAGGTCTCGGAACAAGAAAGTCCAAAGTTGTGGTCTTCGTGTTCGAAACAGAGGCGATGAAATCATCCGTTGTGGCGGCGGAAGGAGGAATCTGGCCATCGGAGATTCCATTGGGAGATGTGAACAAGAAGATGATCAGAAAGTTAAAGAACTGGGAGATGGCAAGGTTTAAGTTCAGAAAAGGTTGTATCACGTTTTACGTTTACGCCGTGAGAAACGCCGGAAATGAAGGGTTTGCGGCGGCGGAGGACTTAAAGGTAATATTACAAGCGGTGGTGGCATTGAAAGATTTCATGGATCACACCGCAATGCTTGTAATGCCCCACCAGAAAAGTATTAATTACAGCTCTTGTCCTCCTTTTGCCATGGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.15

Weight (kDa)

9.98

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7851 PF25236 19 - 205 8e-97 Domain of unknown function (DUF7851)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55420
fragaria_vesca FvH4_7g22470
malus_domestica MD01G1134100.v1.1 MD07G1198300.v1.1
prunus_persica Prupe.2G235300_v2.0.a1
pyrus_communis pycom01g15490 pycom07g18540
rosa_chinensis RchiOBHm_Chr1g0367081
rosa_laevigata RLG00000027301
rosa_multiflora Rmu_sc0003467.1_g000026 Rmu_sc0007424.1_g000002
rosa_roxburghii Rroxscaffold_4G00289640
rosa_rugosa Rorug01G0334300
rosa_samantha Rh1AG341200 Rh1BG301700 Rh1CG317900 Rh1DG334100
rosa_wichuraiana Rw1G030310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 579
AcoI YGGCCR 2 cut(s) 109, 368
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 73, 559
AluBI AGCT 2 cut(s) 160, 621
AluI AGCT 2 cut(s) 160, 621
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 579
AoxI GGCC 2 cut(s) 109, 368
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 563
AsuHPI GGTGA 1 cut(s) 186
AsuII TTCGAA 1 cut(s) 318
BalI TGGCCA 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 301
BccI CCATC 2 cut(s) 379, 427
BceAI ACGGC 2 cut(s) 228, 467
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 275
BisI GCNGC 6 cut(s) 109, 200, 216, 351, 513, 516
BlsI GCNGC 6 cut(s) 110, 201, 217, 352, 514, 517
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 301
Bpu14I TTCGAA 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 210, 639
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 210, 639
BseGI GGATG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 2 cut(s) 111, 370
BsiSI CCGG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 111, 370
Bso31I GGTCTC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 2 cut(s) 408, 571
Bsp19I CCATGG 1 cut(s) 639
BspANI GGCC 2 cut(s) 111, 370
BspPI GGATC 1 cut(s) 579
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 210, 639
BssMI GATC 2 cut(s) 408, 571
BssT1I CCWWGG 1 cut(s) 639
BstBI TTCGAA 1 cut(s) 318
BstDSI CCRYGG 2 cut(s) 210, 639
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 2 cut(s) 411, 574
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 408, 571
BstMWI GCNNNNNNNGC 3 cut(s) 254, 551, 592
BstV2I GAAGAC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 304
BsuRI GGCC 2 cut(s) 111, 370
BtgI CCRYGG 2 cut(s) 210, 639
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 646
CviAII CATG 3 cut(s) 258, 568, 640
CviJI RGCY 7 cut(s) 76, 111, 160, 218, 370, 621, 644
CviKI_1 RGCY 7 cut(s) 76, 111, 160, 218, 370, 621, 644
DpnI GATC 2 cut(s) 410, 573
DpnII GATC 2 cut(s) 408, 571
EaeI YGGCCR 2 cut(s) 109, 368
EciI GGCGGA 2 cut(s) 368, 533
Eco130I CCWWGG 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 3 cut(s) 261, 571, 643
FaiI YATR 3 cut(s) 259, 569, 641
FatI CATG 3 cut(s) 257, 567, 639
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 6 cut(s) 109, 200, 216, 351, 513, 516
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 6 cut(s) 109, 200, 216, 351, 513, 516
FspBI CTAG 1 cut(s) 275
GluI GCNGC 6 cut(s) 109, 200, 216, 351, 513, 516
HaeIII GGCC 2 cut(s) 111, 370
HapII CCGG 1 cut(s) 495
Hin1II CATG 3 cut(s) 261, 571, 643
HinfI GANTC 3 cut(s) 96, 363, 379
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 2 cut(s) 397, 478
Hpy188I TCNGA 8 cut(s) 61, 85, 140, 228, 284, 376, 413, 452
Hpy8I GTNNAC 2 cut(s) 397, 478
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 5 cut(s) 87, 192, 233, 350, 497
HpyCH4IV ACGT 3 cut(s) 87, 467, 474
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 551, 592
HpySE526I ACGT 3 cut(s) 87, 467, 474
Hsp92II CATG 3 cut(s) 261, 571, 643
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 408, 571
LpnPI CCDG 4 cut(s) 352, 412, 508, 614
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 275
MaeII ACGT 3 cut(s) 87, 467, 474
MalI GATC 2 cut(s) 410, 573
MboI GATC 2 cut(s) 408, 571
MboII GAAGA 9 cut(s) 28, 43, 46, 48, 49, 72, 177, 301, 415
MlsI TGGCCA 1 cut(s) 370
MluCI AATT 2 cut(s) 101, 613
MluNI TGGCCA 1 cut(s) 370
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 84, 163, 251
MnlI CCTC 5 cut(s) 182, 319, 353, 514, 639
Mox20I TGGCCA 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 563
MscI TGGCCA 1 cut(s) 370
MseI TTAA 5 cut(s) 165, 419, 444, 527, 612
MslI CAYNNNNRTG 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 370
MspI CCGG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 254, 551, 592
NcoI CCATGG 1 cut(s) 639
NdeII GATC 2 cut(s) 408, 571
NlaIII CATG 3 cut(s) 261, 571, 643
NspV TTCGAA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 363, 379
PkrI GCNGC 6 cut(s) 110, 201, 217, 352, 514, 517
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 5 cut(s) 165, 419, 444, 527, 612
SatI GCNGC 6 cut(s) 109, 200, 216, 351, 513, 516
Sau3AI GATC 2 cut(s) 408, 571
SchI GAGTC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 2 cut(s) 101, 613
SspI AATATT 1 cut(s) 537
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 639
TaiI ACGT 3 cut(s) 90, 470, 477
TaqI TCGA 2 cut(s) 156, 318
TasI AATT 2 cut(s) 101, 613
TauI GCSGC 6 cut(s) 111, 202, 218, 353, 515, 518
TfiI GAWTC 2 cut(s) 363, 379
Tru1I TTAA 5 cut(s) 165, 419, 444, 527, 612
Tru9I TTAA 5 cut(s) 165, 419, 444, 527, 612
TspDTI ATGAA 4 cut(s) 177, 347, 516, 556
TspGWI ACGGA 1 cut(s) 331
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.