Rw1G030310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013288
Physical Location & Seq
Reverse (-)
58260935 .. 58261632
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030310.1

Sequence Viewer

Length: 657 bp
ATGGGAGAAAAAGAAGAGAAGAAGTACAAGAACAAGAAGCAAAAACTCAAACACCAAAACCCCAAAGATGACCAAACCACCACAAAACCAGCATCAGATTTCTCCTTCAAGCCAAGCTCCGACGTAAAGGGTCTCCGATTCGGAGGCCAATTCATCGTAAAGTCCTTCACAATCCGCCGTGCAAGGCCCTTTGAGCTCCTGCAGCTCCTCTCAGTCACACCAGACATCAAAGAAAACCATATCAACAACAACAAAAAGCTGCCCTTTCCTTCCACCACCGCGTTCTTGCCCACAAACTTCACCATTCTAGCACACCATGCCTGGCACACCCTCACACTAGGCCTAGGCACCAAGAAGTCCAAAGTAGTCCTCTTTGTTTTCGAAAATGAGCCCATGAAGGCCGCGTGGACCGCGCTTATCAGAGGGCTCAGTGGGTGTGAGATGGCAAGGTTCAAGTTCAGGAAAGGGTGCATTACTTTTTATGTGTATGCAGTTAGGCAGATTGGGAACATGGGTTTTTCAAATGCTGATGATCTCAGAACAATTCTACAGTCTGTGGTGGCTCTTCAAGATTTCTTGGATCACACTGCTATGCTTGCCATGCCTAACCAGAGAAGCATTAACTTTCAACAACCTCCTACAGCCATGGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.78

Weight (kDa)

9.97

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7851 PF25236 31 - 208 6.4e-88 Domain of unknown function (DUF7851)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55420
fragaria_vesca FvH4_7g22470
malus_domestica MD01G1134100.v1.1 MD07G1198300.v1.1
prunus_persica Prupe.2G235300_v2.0.a1
pyrus_communis pycom01g15490 pycom07g18540
rosa_chinensis RchiOBHm_Chr1g0367081
rosa_laevigata RLG00000027301
rosa_multiflora Rmu_sc0003467.1_g000026 Rmu_sc0007424.1_g000002
rosa_roxburghii Rroxscaffold_4G00289640
rosa_rugosa Rorug01G0334300
rosa_samantha Rh1AG341200 Rh1BG301700 Rh1CG317900 Rh1DG334100
rosa_wichuraiana Rw1G030310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 3 cut(s) 281, 404, 413
AciI CCGC 4 cut(s) 175, 279, 402, 411
AclWI GGATC 1 cut(s) 588
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 5 cut(s) 109, 454, 522, 569, 629
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 117, 196, 205, 259
AluI AGCT 4 cut(s) 117, 196, 205, 259
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 588
AoxI GGCC 4 cut(s) 145, 185, 340, 399
ApeKI GCWGC 2 cut(s) 202, 259
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 186, 408
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 408
AvrII CCTAGG 1 cut(s) 343
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 3 cut(s) 198, 393, 429
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 214, 246
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 4 cut(s) 308, 338, 344, 655
BfmI CTRYAG 3 cut(s) 200, 548, 639
BisI GCNGC 3 cut(s) 203, 260, 402
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 3 cut(s) 204, 261, 403
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 186, 408
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 343, 645
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 343, 645
BseMII CTCAG 3 cut(s) 225, 442, 550
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 214, 246
Bsh1236I CGCG 3 cut(s) 281, 404, 413
BshFI GGCC 4 cut(s) 147, 187, 342, 401
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 4 cut(s) 147, 187, 342, 401
Bso31I GGTCTC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 198, 393, 429
Bsp143I GATC 2 cut(s) 532, 580
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 4 cut(s) 175, 279, 402, 411
BspANI GGCC 4 cut(s) 147, 187, 342, 401
BspCNI CTCAG 3 cut(s) 224, 441, 549
BspFNI CGCG 3 cut(s) 281, 404, 413
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 588
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 343, 645
BssMI GATC 2 cut(s) 532, 580
BssT1I CCWWGG 2 cut(s) 343, 645
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 9, 570
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 3 cut(s) 211, 428, 536
BstDSI CCRYGG 1 cut(s) 645
BstFNI CGCG 3 cut(s) 281, 404, 413
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 535, 583
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 532, 580
BstMWI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 410, 596, 601
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 3 cut(s) 200, 548, 639
BstUI CGCG 3 cut(s) 281, 404, 413
BstV1I GCAGC 2 cut(s) 214, 246
BsuRI GGCC 4 cut(s) 147, 187, 342, 401
BtgI CCRYGG 1 cut(s) 645
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 2 cut(s) 436, 585
Cac8I GCNNGC 1 cut(s) 597
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 186, 408
Csp6I GTAC 1 cut(s) 25
CviAII CATG 5 cut(s) 317, 394, 511, 601, 646
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 211, 428, 536
DpnI GATC 2 cut(s) 534, 582
DpnII GATC 2 cut(s) 532, 580
Eam1104I CTCTTC 2 cut(s) 9, 570
EarI CTCTTC 2 cut(s) 9, 570
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 343, 645
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 3 cut(s) 198, 393, 429
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 343, 645
EcoT38I GRGCYC 3 cut(s) 198, 393, 429
ErhI CCWWGG 2 cut(s) 343, 645
FaeI CATG 5 cut(s) 320, 397, 514, 604, 649
FaiI YATR 9 cut(s) 240, 318, 395, 483, 489, 512, 593, 602, 647
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 5 cut(s) 316, 393, 510, 600, 645
Fnu4HI GCNGC 3 cut(s) 203, 260, 402
FriOI GRGCYC 3 cut(s) 198, 393, 429
Fsp4HI GCNGC 3 cut(s) 203, 260, 402
FspBI CTAG 4 cut(s) 308, 338, 344, 655
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 203, 260, 402
HaeIII GGCC 4 cut(s) 147, 187, 342, 401
HhaI GCGC 1 cut(s) 415
Hin1II CATG 5 cut(s) 320, 397, 514, 604, 649
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 1 cut(s) 138
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 6 cut(s) 97, 121, 137, 143, 422, 539
Hpy188III TCNNGA 2 cut(s) 460, 569
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 115, 175, 279, 391
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 182, 202, 471, 491
HpyF10VI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 410, 596, 601
HpyF3I CTNAG 3 cut(s) 211, 428, 536
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 5 cut(s) 320, 397, 514, 604, 649
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 532, 580
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 122, 201, 210
LpnPI CCDG 7 cut(s) 102, 212, 234, 307, 334, 445, 623
Lsp1109I GCAGC 2 cut(s) 214, 246
LweI GCATC 1 cut(s) 101
MaeI CTAG 4 cut(s) 308, 338, 344, 655
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 534, 582
MboI GATC 2 cut(s) 532, 580
MboII GAAGA 3 cut(s) 26, 31, 557
MhlI GDGCHC 3 cut(s) 198, 393, 429
MluCI AATT 2 cut(s) 149, 543
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 6 cut(s) 137, 218, 341, 380, 416, 645
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 3 cut(s) 281, 404, 413
MwoI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 410, 596, 601
NcoI CCATGG 1 cut(s) 645
NdeII GATC 2 cut(s) 532, 580
NlaIII CATG 5 cut(s) 320, 397, 514, 604, 649
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 381
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 3 cut(s) 204, 261, 403
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 186, 408
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 590
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 3 cut(s) 203, 260, 402
Sau3AI GATC 2 cut(s) 532, 580
Sau96I GGNCC 2 cut(s) 186, 408
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 3 cut(s) 198, 393, 429
SetI ASST 7 cut(s) 119, 126, 198, 207, 261, 452, 637
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 3 cut(s) 200, 548, 639
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse9I AATT 2 cut(s) 149, 543
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 4 cut(s) 175, 279, 402, 411
SspMI CTAG 4 cut(s) 308, 338, 344, 655
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 343, 645
TaaI ACNGT 1 cut(s) 552
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 149, 543
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 436, 592
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 202, 259
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 142, 410
TspRI CASTG 2 cut(s) 436, 592
VpaK11BI GGWCC 1 cut(s) 408
XmaJI CCTAGG 1 cut(s) 343
XspI CTAG 4 cut(s) 308, 338, 344, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.