Prupe.2G235300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013288
Physical Location & Seq
Reverse (-)
25740710 .. 25741637
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G235300.1

Sequence Viewer

Length: 687 bp
ATGGGAGAGAAAGAGAAGAAGACCAGTAACAAGAACAAGAAGCAGAAACACCAGCACCCAAATGATCAAACCACAAAAACAGCCTCATCAGATTTCTCATTCAAGCCAAGCTCTGAGGTGAAGGGTCTGCGTTTTGGAGGCCAGTTCATTGTAAAATCATTCACAATCAGGCGTGCAAGGCCTTTAGAGCTTCTGCAACTCCTCTCACTTCCACCACCAAACAAACCCAACTCCAACAATAAGCTTCCTTTTCCTTCAACCACAGCTTTTCTTCCCACAAACTTCACAATCTTGGCACACCATGCCTGGCACACCCTCACATTAGGCCTTGGCACCAAGAAATCCAAAGTGGTTCTGTTTGTTTTCGAAACCGAAGCCATGAAGGCTGCCGTAGACCGCGTTTGGCCACCAGAAATTCCTCTTGGGGAAGTGAACAAGAGGCTCATCAGAGGCCTGAATGGCTGTGAGATAGCAAGGTTCAAATTCAGAAAAGGATGCATAACTTTTTATGTGTATGCTGTTAGACAAGTGGGAAGCTTGGGTTTCTCAAGTGCTGATGATCTCAGAACAATTCTGCAGTCTGTTGTGGCGCTTCAAGATTTCTTGGATCACACTGCAATGCTTGCCATGCCCAACCAGAGAACCATTAGCTATGCAAATGTAGCTCCTGTGGCCATGGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.48

Weight (kDa)

10.11

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55420
fragaria_vesca FvH4_7g22470
malus_domestica MD01G1134100.v1.1 MD07G1198300.v1.1
prunus_persica Prupe.2G235300_v2.0.a1
pyrus_communis pycom01g15490 pycom07g18540
rosa_chinensis RchiOBHm_Chr1g0367081
rosa_laevigata RLG00000027301
rosa_multiflora Rmu_sc0003467.1_g000026 Rmu_sc0007424.1_g000002
rosa_roxburghii Rroxscaffold_4G00289640
rosa_rugosa Rorug01G0334300
rosa_samantha Rh1AG341200 Rh1BG301700 Rh1CG317900 Rh1DG334100
rosa_wichuraiana Rw1G030310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 399
AciI CCGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 615
AcoI YGGCCR 2 cut(s) 404, 672
AcsI RAATTY 2 cut(s) 414, 482
AgsI TTSAA 4 cut(s) 103, 258, 481, 596
AjnI CCWGG 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 7 cut(s) 111, 190, 244, 266, 537, 651, 665
AluI AGCT 7 cut(s) 111, 190, 244, 266, 537, 651, 665
AlwI GGATC 1 cut(s) 615
AoxI GGCC 6 cut(s) 139, 179, 325, 404, 451, 672
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 2 cut(s) 414, 482
AspLEI GCGC 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 366
BalI TGGCCA 2 cut(s) 406, 674
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 1 cut(s) 64
BfaI CTAG 1 cut(s) 685
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 593
BglI GCCNNNNNGGC 2 cut(s) 383, 459
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 532
BsaJI CCNNGG 2 cut(s) 328, 675
Bse1I ACTGG 2 cut(s) 24, 142
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 328, 675
BseGI GGATG 1 cut(s) 500
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 105, 577
BseNI ACTGG 2 cut(s) 24, 142
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 6 cut(s) 141, 181, 327, 406, 453, 674
BshNI GGYRCC 1 cut(s) 332
BsnI GGCC 6 cut(s) 141, 181, 327, 406, 453, 674
Bsp119I TTCGAA 1 cut(s) 366
Bsp143I GATC 3 cut(s) 64, 559, 607
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 1 cut(s) 397
BspANI GGCC 6 cut(s) 141, 181, 327, 406, 453, 674
BspCNI CTCAG 2 cut(s) 106, 576
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 1 cut(s) 615
BspT104I TTCGAA 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 2 cut(s) 24, 142
BssECI CCNNGG 2 cut(s) 328, 675
BssMI GATC 3 cut(s) 64, 559, 607
BssT1I CCWWGG 2 cut(s) 328, 675
Bst2UI CCWGG 1 cut(s) 307
BstAPI GCANNNNNTGC 2 cut(s) 302, 623
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 174, 624
BstDEI CTNAG 2 cut(s) 114, 563
BstDSI CCRYGG 1 cut(s) 675
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 1 cut(s) 399
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 67, 562, 610
BstMBI GATC 3 cut(s) 64, 559, 607
BstMWI GCNNNNNNNGC 9 cut(s) 178, 187, 302, 383, 459, 623, 628, 662, 671
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 26
BsuRI GGCC 6 cut(s) 141, 181, 327, 406, 453, 674
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 174, 624
CfoI GCGC 1 cut(s) 592
CviAII CATG 4 cut(s) 302, 379, 628, 676
DdeI CTNAG 2 cut(s) 114, 563
DpnI GATC 3 cut(s) 66, 561, 609
DpnII GATC 3 cut(s) 64, 559, 607
EaeI YGGCCR 2 cut(s) 404, 672
Eco130I CCWWGG 2 cut(s) 328, 675
Eco147I AGGCCT 3 cut(s) 181, 327, 453
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 328, 675
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 2 cut(s) 328, 675
FaeI CATG 4 cut(s) 305, 382, 631, 679
FaiI YATR 8 cut(s) 303, 380, 500, 510, 516, 629, 654, 677
FatI CATG 4 cut(s) 301, 378, 627, 675
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 685
GlaI GCGC 1 cut(s) 591
GluI GCNGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 6 cut(s) 141, 181, 327, 406, 453, 674
HhaI GCGC 1 cut(s) 592
Hin1II CATG 4 cut(s) 305, 382, 631, 679
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HindIII AAGCTT 2 cut(s) 242, 535
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 394, 433
Hpy188I TCNGA 5 cut(s) 91, 115, 449, 488, 566
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 2 cut(s) 394, 433
HpyAV CCTTC 3 cut(s) 115, 264, 376
HpyCH4V TGCA 6 cut(s) 176, 196, 498, 577, 617, 656
HpyF10VI GCNNNNNNNGC 9 cut(s) 178, 187, 302, 383, 459, 623, 628, 662, 671
HpyF3I CTNAG 2 cut(s) 114, 563
Hsp92II CATG 4 cut(s) 305, 382, 631, 679
HspAI GCGC 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 3 cut(s) 64, 559, 607
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 485
MaeI CTAG 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 66, 561, 609
MboI GATC 3 cut(s) 64, 559, 607
MboII GAAGA 3 cut(s) 28, 31, 263
MlsI TGGCCA 2 cut(s) 406, 674
MluCI AATT 3 cut(s) 414, 482, 570
MluNI TGGCCA 2 cut(s) 406, 674
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 94, 109, 131, 212, 326, 429, 432, 443
Mox20I TGGCCA 2 cut(s) 406, 674
Mph1103I ATGCAT 1 cut(s) 500
MscI TGGCCA 2 cut(s) 406, 674
MslI CAYNNNNRTG 2 cut(s) 60, 617
Msp20I TGGCCA 2 cut(s) 406, 674
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 9 cut(s) 178, 187, 302, 383, 459, 623, 628, 662, 671
NcoI CCATGG 1 cut(s) 675
NdeII GATC 3 cut(s) 64, 559, 607
NlaIII CATG 4 cut(s) 305, 382, 631, 679
NlaIV GGNNCC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 500
NspV TTCGAA 1 cut(s) 366
PceI AGGCCT 3 cut(s) 181, 327, 453
PkrI GCNGC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 334
PstI CTGCAG 1 cut(s) 579
RseI CAYNNNNRTG 2 cut(s) 60, 617
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 64, 559, 607
ScrFI CCNGG 1 cut(s) 307
SetI ASST 9 cut(s) 113, 120, 192, 246, 268, 479, 539, 653, 667
SfaNI GCATC 1 cut(s) 485
SfcI CTRYAG 1 cut(s) 575
SfuI TTCGAA 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 60, 617
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 3 cut(s) 414, 482, 570
SseBI AGGCCT 3 cut(s) 181, 327, 453
SsiI CCGC 1 cut(s) 397
SspMI CTAG 1 cut(s) 685
StuI AGGCCT 3 cut(s) 181, 327, 453
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 328, 675
TaqI TCGA 1 cut(s) 366
TasI AATT 3 cut(s) 414, 482, 570
TscAI CASTG 1 cut(s) 619
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 136, 395
TspRI CASTG 1 cut(s) 619
XapI RAATTY 2 cut(s) 414, 482
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 685
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.