FvH4_7g22470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013288
Physical Location & Seq
Reverse (-)
17684544 .. 17685242
699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22470.t1

Sequence Viewer

Length: 699 bp
ATGGGAGAAAAAGAAGAGAAGAAGAACAAGAACAAGAAGCAGAAACTCAAACACCAAAACCCCAAAGATGATCAAACCACCACTAAACCAGCATCAGATTTCTCCTTCAAGCCAAGCTCCGATGTAAAGGGTCTCCGATTTGGAGGCCAGTTCATCGTAAAGTCCTTCACAATCCGACGTGCAAGGCCCTTTGAGCTCCTACAGCTCCTCTCAGTCACACCAAACATCAAAGAAAACCATATCAGCAATAACAAGAAGCTACCCTTTCCATCCACCACAGCTTTCTTGCCCACAAACTTCACCATTCTAGCACACCATGCTTGGCATACCCTTACACTAGGCCTAGGCACCAAGAAGTCCAAAGTAGTACTCTTTGTTTTCGACAATGAGGCCATGAAGGCTGCAGTGGACCGCGTTTGGCCGCCGGAAATTCCACTCGGGGAAGTGAACAAGAAGCTGATCAGAGGGCTCAGTGGGTGTGAGATGGCAAGGTTCAAGTTCAGGAAAGGGTGCATTACTTTTTATGTGTATGCAGTTAGGCAAATTGGGAACTTGGGTTTTTCAAATGCTGATGATCTCAGAACAATTCTACAGTCTGTGGTGGCTCTTCAAGATTTCTTGGATCACACTGCTATGCTTGCCATGCCTAACCAGAGAAGCATTAACTTTCAGCAACCTCCTACAGCCATGGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

10.0

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7851 PF25236 31 - 222 8.5e-107 Domain of unknown function (DUF7851)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55420
fragaria_vesca FvH4_7g22470
malus_domestica MD01G1134100.v1.1 MD07G1198300.v1.1
prunus_persica Prupe.2G235300_v2.0.a1
pyrus_communis pycom01g15490 pycom07g18540
rosa_chinensis RchiOBHm_Chr1g0367081
rosa_laevigata RLG00000027301
rosa_multiflora Rmu_sc0003467.1_g000026 Rmu_sc0007424.1_g000002
rosa_roxburghii Rroxscaffold_4G00289640
rosa_rugosa Rorug01G0334300
rosa_samantha Rh1AG341200 Rh1BG301700 Rh1CG317900 Rh1DG334100
rosa_wichuraiana Rw1G030310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 412, 422
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 1 cut(s) 369
AgsI TTSAA 4 cut(s) 109, 496, 564, 611
AjiI CACGTC 1 cut(s) 179
AluBI AGCT 6 cut(s) 117, 196, 205, 259, 281, 457
AluI AGCT 6 cut(s) 117, 196, 205, 259, 281, 457
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 5 cut(s) 145, 185, 340, 390, 419
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 429
AspA2I CCTAGG 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 186, 409
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 409
AvrII CCTAGG 1 cut(s) 343
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 198, 471
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 277, 478
BclI TGATCA 2 cut(s) 70, 459
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 4 cut(s) 308, 338, 344, 697
BfmI CTRYAG 4 cut(s) 200, 402, 590, 681
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 2 cut(s) 402, 422
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 2 cut(s) 403, 423
BmcAI AGTACT 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 186, 409
BmiI GGNNCC 1 cut(s) 349
BmsI GCATC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 343, 687
Bse1I ACTGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 343, 687
BseGI GGATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 225, 484, 592
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 5 cut(s) 147, 187, 342, 392, 421
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 5 cut(s) 147, 187, 342, 392, 421
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 198, 471
Bsp143I GATC 4 cut(s) 70, 459, 574, 622
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 2 cut(s) 412, 422
BspANI GGCC 5 cut(s) 147, 187, 342, 392, 421
BspCNI CTCAG 3 cut(s) 224, 483, 591
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 630
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 343, 687
BssMI GATC 4 cut(s) 70, 459, 574, 622
BssT1I CCWWGG 2 cut(s) 343, 687
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 2 cut(s) 9, 612
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 211, 470, 578
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 4 cut(s) 73, 462, 577, 625
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 70, 459, 574, 622
BstMWI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 398, 638, 643
BstSFI CTRYAG 4 cut(s) 200, 402, 590, 681
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 388
BsuRI GGCC 5 cut(s) 147, 187, 342, 392, 421
BtgI CCRYGG 1 cut(s) 687
BtrI CACGTC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 2 cut(s) 411, 627
BtsIMutI CAGTG 3 cut(s) 411, 478, 627
Cac8I GCNNGC 1 cut(s) 639
Cfr13I GGNCC 2 cut(s) 186, 409
Csp6I GTAC 1 cut(s) 368
CviAII CATG 4 cut(s) 317, 394, 643, 688
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 211, 470, 578
DpnI GATC 4 cut(s) 72, 461, 576, 624
DpnII GATC 4 cut(s) 70, 459, 574, 622
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 9, 612
EarI CTCTTC 2 cut(s) 9, 612
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 343, 687
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 198, 471
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 343, 687
EcoT38I GRGCYC 2 cut(s) 198, 471
ErhI CCWWGG 2 cut(s) 343, 687
FaeI CATG 4 cut(s) 320, 397, 646, 691
FaiI YATR 9 cut(s) 240, 318, 327, 395, 525, 531, 635, 644, 689
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 4 cut(s) 316, 393, 642, 687
FbaI TGATCA 2 cut(s) 70, 459
Fnu4HI GCNGC 2 cut(s) 402, 422
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 2 cut(s) 198, 471
Fsp4HI GCNGC 2 cut(s) 402, 422
FspBI CTAG 4 cut(s) 308, 338, 344, 697
GluI GCNGC 2 cut(s) 402, 422
HaeIII GGCC 5 cut(s) 147, 187, 342, 392, 421
HapII CCGG 1 cut(s) 425
Hin1II CATG 4 cut(s) 320, 397, 646, 691
HpaII CCGG 1 cut(s) 425
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 409, 448
Hpy188I TCNGA 6 cut(s) 97, 121, 137, 176, 464, 581
Hpy188III TCNNGA 2 cut(s) 502, 611
Hpy8I GTNNAC 2 cut(s) 409, 448
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 115, 175, 391
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 182, 404, 513, 533
HpyF10VI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 398, 638, 643
HpyF3I CTNAG 3 cut(s) 211, 470, 578
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 4 cut(s) 320, 397, 646, 691
Ksp22I TGATCA 2 cut(s) 70, 459
Kzo9I GATC 4 cut(s) 70, 459, 574, 622
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 3 cut(s) 122, 201, 210
LpnPI CCDG 5 cut(s) 102, 161, 438, 487, 665
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 101
MaeI CTAG 4 cut(s) 308, 338, 344, 697
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 72, 461, 576, 624
MboI GATC 4 cut(s) 70, 459, 574, 622
MboII GAAGA 4 cut(s) 26, 31, 34, 599
MhlI GDGCHC 2 cut(s) 198, 471
MluCI AATT 3 cut(s) 429, 543, 585
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 5 cut(s) 137, 218, 382, 458, 687
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 6 cut(s) 193, 202, 317, 398, 638, 643
NcoI CCATGG 1 cut(s) 687
NdeII GATC 4 cut(s) 70, 459, 574, 622
NlaIII CATG 4 cut(s) 320, 397, 646, 691
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 612
PkrI GCNGC 2 cut(s) 403, 423
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 186, 409
PstI CTGCAG 1 cut(s) 406
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 2 cut(s) 402, 422
Sau3AI GATC 4 cut(s) 70, 459, 574, 622
Sau96I GGNCC 2 cut(s) 186, 409
ScaI AGTACT 1 cut(s) 369
SduI GDGCHC 2 cut(s) 198, 471
SetI ASST 9 cut(s) 119, 181, 198, 207, 261, 283, 459, 494, 679
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 4 cut(s) 200, 402, 590, 681
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 3 cut(s) 429, 543, 585
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 2 cut(s) 412, 422
SspMI CTAG 4 cut(s) 308, 338, 344, 697
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 342
StyI CCWWGG 2 cut(s) 343, 687
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 429, 543, 585
TatI WGTACW 1 cut(s) 367
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 3 cut(s) 411, 478, 634
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 142, 410
TspRI CASTG 3 cut(s) 411, 478, 634
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 429
XmaJI CCTAGG 1 cut(s) 343
XspI CTAG 4 cut(s) 308, 338, 344, 697
ZrmI AGTACT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.