AT3G55470

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012403
Physical Location & Seq
Forward (+)
20564081 .. 20566329
2249 bp
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UTR
Exon/CDS
Intron
AT3G55470.2

Sequence Viewer

Length: 471 bp
ATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAAAGGTCTCAAGCGCTCTGATTTTCTTGGTAAGATAGATCCATATGTTGAGATCCAATACAAAGGGCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAATGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCCGACTACAAACTCATCGTCAAAGTCATGGATCATGATACTTTCTCCTCTGACGATTTCATTGGCGAAGCCACGGTACATGTGAAAGAGCTATTGGAAATGGGAGTGGAGAAGGGAACGGCGGAGCTAAGGCCAACCAAGTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATTGGAGTTTCTTACTCTCTTTTGCAAGACAGGGGAATGGATGGAGAACAGTTTGGAGGATGGAAGCATAGCCAAGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

156

Amino Acids

17.32

Weight (kDa)

5.25

Isoelectric Point (pI)

19.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 104 1.6e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55470 AT3G55470
fragaria_vesca FvH4_7g22610
malus_domestica MD01G1135100.v1.1 MD07G1199800.v1.1
prunus_persica Prupe.2G236500_v2.0.a1 Prupe.2G236500_v2.0.a1
pyrus_communis pycom07g18660
rosa_chinensis RchiOBHm_Chr1g0367731
rosa_laevigata RLG00000027267
rosa_multiflora Rmu_co8228921.1_g000001 Rmu_sc0016772.1_g000001
rosa_roxburghii Rroxscaffold_4G00289270
rosa_rugosa Rorug01G0336300
rosa_samantha Rh1AG343400 Rh1BG305200 Rh1CG320800 Rh1DG337400
rosa_wichuraiana Rw1G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 2 cut(s) 112, 323
AclWI GGATC 3 cut(s) 71, 85, 240
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 279, 344
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 292, 328, 382
AluI AGCT 3 cut(s) 292, 328, 382
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 3 cut(s) 71, 85, 240
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 120
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspLEI GCGC 2 cut(s) 54, 203
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
BbvI GCAGC 1 cut(s) 132
BccI CCATC 3 cut(s) 131, 422, 441
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 55, 204
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 196, 202
BmrFI CCNGG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 32, 38
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 433, 452
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 50
Bsp143I GATC 5 cut(s) 30, 76, 90, 232, 361
BspACI CCGC 2 cut(s) 112, 323
BspANI GGCC 1 cut(s) 334
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 196, 202
BspPI GGATC 3 cut(s) 71, 85, 240
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 5 cut(s) 30, 76, 90, 232, 361
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 277, 438
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 433, 452
BstH2I RGCGCY 2 cut(s) 55, 204
BstHHI GCGC 2 cut(s) 54, 203
BstKTI GATC 5 cut(s) 33, 79, 93, 235, 364
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 5 cut(s) 30, 76, 90, 232, 361
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 76, 90
BstYI RGATCY 2 cut(s) 76, 90
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 433, 452
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 380
CciI TCATGA 1 cut(s) 235
CfoI GCGC 2 cut(s) 54, 203
Csp6I GTAC 2 cut(s) 278, 343
CviAII CATG 4 cut(s) 156, 229, 236, 281
CviJI RGCY 8 cut(s) 5, 195, 272, 292, 328, 334, 382, 459
CviKI_1 RGCY 8 cut(s) 5, 195, 272, 292, 328, 334, 382, 459
CviQI GTAC 2 cut(s) 278, 343
DdeI CTNAG 1 cut(s) 329
DinI GGCGCC 1 cut(s) 202
DpnI GATC 5 cut(s) 32, 78, 92, 234, 363
DpnII GATC 5 cut(s) 30, 76, 90, 232, 361
EciI GGCGGA 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
FaeI CATG 4 cut(s) 159, 232, 239, 284
FaiI YATR 7 cut(s) 82, 84, 157, 230, 237, 282, 456
FatI CATG 4 cut(s) 155, 228, 235, 280
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 2 cut(s) 440, 459
Fsp4HI GCNGC 1 cut(s) 121
GlaI GCGC 2 cut(s) 53, 202
GluI GCNGC 1 cut(s) 121
HaeII RGCGCY 2 cut(s) 55, 204
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 198
HhaI GCGC 2 cut(s) 54, 203
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 159, 232, 239, 284
Hin6I GCGC 2 cut(s) 52, 201
HinP1I GCGC 2 cut(s) 52, 201
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 12, 356
HpaII CCGG 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 30, 58, 153, 253, 361
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 277, 438
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 159, 232, 239, 284
HspAI GCGC 2 cut(s) 52, 201
KasI GGCGCC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 5 cut(s) 30, 76, 90, 232, 361
LmnI GCTCC 2 cut(s) 200, 325
LpnPI CCDG 4 cut(s) 177, 204, 211, 403
Lsp1109I GCAGC 1 cut(s) 132
MalI GATC 5 cut(s) 32, 78, 92, 234, 363
MboI GATC 5 cut(s) 30, 76, 90, 232, 361
MboII GAAGA 1 cut(s) 146
MflI RGATCY 2 cut(s) 76, 90
MluCI AATT 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 4 cut(s) 13, 134, 259, 437
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 201
NdeI CATATG 1 cut(s) 82
NdeII GATC 5 cut(s) 30, 76, 90, 232, 361
NlaIII CATG 4 cut(s) 159, 232, 239, 284
NlaIV GGNNCC 2 cut(s) 196, 202
NspI RCATGY 1 cut(s) 284
PagI TCATGA 1 cut(s) 235
PciI ACATGT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 350
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 196, 202
PsuI RGATCY 2 cut(s) 76, 90
RsaI GTAC 2 cut(s) 279, 344
RsaNI GTAC 2 cut(s) 278, 343
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 5 cut(s) 30, 76, 90, 232, 361
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 192
SetI ASST 6 cut(s) 24, 46, 145, 294, 330, 384
SfoI GGCGCC 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 17, 47
SmoI CTYRAG 2 cut(s) 17, 47
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 112, 323
SspDI GGCGCC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 277, 438
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.